[ome-users] unable to open lif life

Mai Tran maimisa8 at gmail.com
Thu Apr 9 22:43:48 BST 2015


I cannot open some of my lif files and have no idea why that is. One of my
file opened fine but I don't know what was different about that one. Below
is the error message that I got. I've tried to update to the new bioformat
but that makes no difference. I've asked my colleagues and tried opening
files on their computer but same thing so I'm hitting a wall with trying to
open my lif files.

LIFReader initializing C:\Users\maimisa\Desktop\Confocal\15_3_1 confocal
example.lif
Reading header
Finding image offsets
LIFReader initializing C:\Users\maimisa\Desktop\Confocal\15_3_4_A549+CQ.lif
Reading header
Finding image offsets
Exception in thread "DrawAndDrop" java.lang.NumberFormatException: empty
String
at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:992)
at java.lang.Double.valueOf(Double.java:475)
at java.lang.Double.<init>(Double.java:567)
at loci.formats.in.LIFReader.translateFilterSettings(LIFReader.java:1495)
at loci.formats.in.LIFReader.translateMetadata(LIFReader.java:1006)
at loci.formats.in.LIFReader.initMetadata(LIFReader.java:511)
at loci.formats.in.LIFReader.initFile(LIFReader.java:453)
at loci.formats.FormatReader.setId(FormatReader.java:1317)
at loci.formats.ImageReader.setId(ImageReader.java:753)
at io.scif.bf.BioFormatsFormat$Parser.typedParse(BioFormatsFormat.java:424)
at io.scif.bf.BioFormatsFormat$Parser.typedParse(BioFormatsFormat.java:406)


Any help is greatly appreciated
Thank you so much

mai
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