[ome-users] Upgrade problem
Anatole Chessel
anatole.chessel at gurdon.cam.ac.uk
Thu Sep 18 15:42:49 BST 2014
It worked! After removing all traces of pythons I could find (clean
uninstall of all I could and deletions of the rest), and reinstalling
python2.6 and all the dependencies the isapi_wsgi test worked. OMERO.web
failed the first time but seemed to be working from then on (but that is
a known issue I believe?). Well it only took me 4.5 days...
Many thanks again for the help (and I'll be sure we take a linux server
the next time)
A.
On 18/09/2014 13:26, Simon Li wrote:
> It sounds like IIS is confused by your Python installation, from what
> I can tell IIS completely ignores any environment variables and
> obtains the Python location from somewhere in the Windows registry.
> All I can suggest is to try various combinations of
> uninstalling/reinstalling Python and isapi_wsgi (including manually
> deleting any files if necessary).
>
> Simon
>
> On 18/09/2014 13:13, "Anatole Chessel"
> <anatole.chessel at gurdon.cam.ac.uk
> <mailto:anatole.chessel at gurdon.cam.ac.uk>> wrote:
>
>
> That gave the same error 'Failed to import...'. Weirdly, if I put
> the 32bit to false, it gives a different error, the one you would
> expect from a 632/64bit mismatch, so it does seem to see the file...
>
> A.
>
>
> On 18/09/2014 12:19, Simon Li wrote:
>> Hi Anatole
>>
>> I'm testing IIS at the moment (it seems to be particularly
>> sensitive to the Python setup). I'll let you know.
>>
>> In the meantime can you check if isapi_wsgi is working
>> irrespective of OMERO? Follow the instructions at the bottom of
>> https://code.google.com/p/isapi-wsgi/wiki/InstallationInstructions#Testing
>>
>> Simon
>>
>>
>> On 18/09/2014 12:05, "Anatole Chessel"
>> <anatole.chessel at gurdon.cam.ac.uk
>> <mailto:anatole.chessel at gurdon.cam.ac.uk>> wrote:
>>
>>
>> That did work, omero seem to start normally! Simon, I owe you
>> a beer.
>>
>> OMERO.web is still broken however, in the same way as with
>> ice3.5/python2.7 64bits (see the forum thread linked below),
>> ie, with an error logged by 'ISAPI Filter or Extention'
>> saying 'Failed to import callback module 'omero_web_iis' The
>> system cannot find the file specified.'. However that is most
>> likely a completely separate error, due to my iis being
>> strangely configured...
>>
>> Thanks
>> A.
>>
>>
>> On 18/09/2014 11:01, Simon Li wrote:
>>> Can you try deleting the OMERO.server-5.0.4-ice34-b43\var
>>> directory and seeing if OMERO starts up?
>>>
>>> Simon
>>>
>>> On 18/09/2014 10:55, "Anatole Chessel"
>>> <anatole.chessel at gurdon.cam.ac.uk
>>> <mailto:anatole.chessel at gurdon.cam.ac.uk>> wrote:
>>>
>>>
>>> Actually, I just realised that a bunch of
>>> errors/informations are logged in the windows event
>>> viewer, which may help diagnose things:
>>> 4 information events, from OMERO.master:
>>> -'Berkeley DB: DbEnv "Registry": Unacceptable log file
>>> C:\Users\omero\Desktop\OMERO.server-5.0.4-ice34-b43\var\registry\log.0000000001:
>>> unsupported log version 19'
>>> -'Berkeley DB: DbEnv "Registry": Invalid log file:
>>> log.0000000001: Invalid argument'
>>> -'Berkeley DB: DbEnv "Registry": PANIC: Invalid argument'
>>> -'Berkeley DB: DbEnv "Registry": process-private: unable
>>> to find environment'
>>>
>>> 2 errors events, the first from OMERO.master, the second
>>> from Service Control Manager:
>>> -'exception occurred while initializing a communicator:
>>> SharedDbEnv.cpp:619: Freeze::DatabaseException:
>>> DbEnv::open: DB_RUNRECOVERY: Fatal error, run database
>>> recovery'
>>> -'The OMERO.master service terminated with
>>> service-specific error Incorrect function..'
>>>
>>> Hope that helps,
>>> A.
>>>
>>> On 17/09/2014 13:57, Anatole Chessel wrote:
>>>> Hi all,
>>>>
>>>> I seem to be having the exact same problem. I am trying
>>>> to upgrade from 4.4 to 5.0.4 on a windows server
>>>> 2008R2; after trying without success the OME compiled
>>>> ice3.5/python2.7 64bit (full thread:
>>>> http://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7629&start=10
>>>> in short omero eventually worked but omero.web did
>>>> not), I tried ice3.4/python2.6 32bits with the same
>>>> issues as Jason: 'Failed to startup some components
>>>> after 300 seconds' and no logs, and launching manually
>>>> gives a logfile with the same error he just reported...
>>>>
>>>> Many thanks,
>>>> A.
>>>>
>>>>
>>>> On 17/09/2014 13:36, Kotecki, Jason wrote:
>>>>> Josh, attached is the task list. Also, I ran the command for blitz manually and that actually created a log file.
>>>>>
>>>>> Thanks,
>>>>> Jason
>>>>>
>>
>> (...)
>>
>> --
>> Anatole Chessel, PhD
>> Research associate
>> University of Cambridge
>> Tennis Court Road, Cambridge CB2 1PD
>> tel: +44 (0)1223 334065
>>
>>
>> The University of Dundee is a registered Scottish Charity, No:
>> SC015096
>>
>>
>> _______________________________________________
>> ome-users mailing list
>> ome-users at lists.openmicroscopy.org.ukhttp://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
> --
> Anatole Chessel, PhD
> Research associate
> University of Cambridge
> Tennis Court Road, Cambridge CB2 1PD
> tel: +44 (0)1223 334065
>
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
>
>
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
--
Anatole Chessel, PhD
Research associate
University of Cambridge
Tennis Court Road, Cambridge CB2 1PD
tel: +44 (0)1223 334065
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20140918/dabb9460/attachment.html>
More information about the ome-users
mailing list