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It worked! After removing all traces of pythons I could find (clean
uninstall of all I could and deletions of the rest), and
reinstalling python2.6 and all the dependencies the isapi_wsgi test
worked. OMERO.web failed the first time but seemed to be working
from then on (but that is a known issue I believe?). Well it only
took me 4.5 days...<br>
<br>
Many thanks again for the help (and I'll be sure we take a linux
server the next time)<br>
<br>
A.<br>
<br>
<div class="moz-cite-prefix">On 18/09/2014 13:26, Simon Li wrote:<br>
</div>
<blockquote cite="mid:D0408C4F.5C11%25spli@dundee.ac.uk" type="cite">
<meta http-equiv="Content-Type" content="text/html;
charset=ISO-8859-1">
<div>It sounds like IIS is confused by your Python installation,
from what I can tell IIS completely ignores any environment
variables and obtains the Python location from somewhere in the
Windows registry. All I can suggest is to try various
combinations of uninstalling/reinstalling Python and isapi_wsgi
(including manually deleting any files if necessary).</div>
<div><br>
</div>
<div>Simon</div>
<div><br>
</div>
<span id="OLK_SRC_BODY_SECTION">
<div>
<div>On 18/09/2014 13:13, "Anatole Chessel" <<a
moz-do-not-send="true"
href="mailto:anatole.chessel@gurdon.cam.ac.uk">anatole.chessel@gurdon.cam.ac.uk</a>>
wrote:</div>
</div>
<div><br>
</div>
<blockquote id="MAC_OUTLOOK_ATTRIBUTION_BLOCKQUOTE"
style="BORDER-LEFT: #b5c4df 5 solid; PADDING:0 0 0 5; MARGIN:0
0 0 5;">
<div>
<div bgcolor="#FFFFFF" text="#000000"><br>
That gave the same error 'Failed to import...'. Weirdly,
if I put the 32bit to false, it gives a different error,
the one you would expect from a 632/64bit mismatch, so it
does seem to see the file...<br>
<br>
A.<br>
<br>
<br>
<div class="moz-cite-prefix">On 18/09/2014 12:19, Simon Li
wrote:<br>
</div>
<blockquote cite="mid:D0407E1A.5BF1%25spli@dundee.ac.uk"
type="cite">
<div>
<div>Hi Anatole</div>
<div><br>
</div>
<div>I’m testing IIS at the moment (it seems to be
particularly sensitive to the Python setup). I’ll
let you know.</div>
<div><br>
</div>
<div>In the meantime can you check if isapi_wsgi is
working irrespective of OMERO? Follow the
instructions at the bottom of <a
moz-do-not-send="true"
href="https://code.google.com/p/isapi-wsgi/wiki/InstallationInstructions#Testing">https://code.google.com/p/isapi-wsgi/wiki/InstallationInstructions#Testing</a></div>
<div><br>
</div>
<div>Simon</div>
</div>
<div><br>
</div>
<div><br>
</div>
<span id="OLK_SRC_BODY_SECTION">
<div>
<div>On 18/09/2014 12:05, "Anatole Chessel" <<a
moz-do-not-send="true"
href="mailto:anatole.chessel@gurdon.cam.ac.uk">anatole.chessel@gurdon.cam.ac.uk</a>>
wrote:</div>
</div>
<div><br>
</div>
<blockquote id="MAC_OUTLOOK_ATTRIBUTION_BLOCKQUOTE"
style="BORDER-LEFT: #b5c4df 5 solid; PADDING:0 0 0
5; MARGIN:0 0 0 5;">
<div>
<div bgcolor="#FFFFFF" text="#000000"><br>
That did work, omero seem to start normally!
Simon, I owe you a beer.<br>
<br>
OMERO.web is still broken however, in the same
way as with ice3.5/python2.7 64bits (see the
forum thread linked below), ie, with an error
logged by 'ISAPI Filter or Extention' saying
'Failed to import callback module
'omero_web_iis' The system cannot find the file
specified.'. However that is most likely a
completely separate error, due to my iis being
strangely configured...<br>
<br>
Thanks<br>
A.<br>
<br>
<br>
<div class="moz-cite-prefix">On 18/09/2014
11:01, Simon Li wrote:<br>
</div>
<blockquote
cite="mid:D0406BD5.5BC4%25spli@dundee.ac.uk"
type="cite">
<div>Can you try deleting the
OMERO.server-5.0.4-ice34-b43\var directory
and seeing if OMERO starts up?</div>
<div><br>
</div>
<div>Simon</div>
<div><br>
</div>
<span id="OLK_SRC_BODY_SECTION">
<div>
<div>On 18/09/2014 10:55, "Anatole
Chessel" <<a moz-do-not-send="true"
href="mailto:anatole.chessel@gurdon.cam.ac.uk">anatole.chessel@gurdon.cam.ac.uk</a>>
wrote:</div>
</div>
<div><br>
</div>
<blockquote
id="MAC_OUTLOOK_ATTRIBUTION_BLOCKQUOTE"
style="BORDER-LEFT: #b5c4df 5 solid;
PADDING:0 0 0 5; MARGIN:0 0 0 5;">
<div>
<div bgcolor="#FFFFFF" text="#000000"><br>
Actually, I just realised that a bunch
of errors/informations are logged in
the windows event viewer, which may
help diagnose things:<br>
4 information events, from
OMERO.master:<br>
-'Berkeley DB: DbEnv "Registry":
Unacceptable log file
C:\Users\omero\Desktop\OMERO.server-5.0.4-ice34-b43\var\registry\log.0000000001:
unsupported log version 19'<br>
-'Berkeley DB: DbEnv "Registry":
Invalid log file: log.0000000001:
Invalid argument'<br>
-'Berkeley DB: DbEnv "Registry":
PANIC: Invalid argument'<br>
-'Berkeley DB: DbEnv "Registry":
process-private: unable to find
environment'<br>
<br>
2 errors events, the first from
OMERO.master, the second from Service
Control Manager:<br>
-'exception occurred while
initializing a communicator:<br>
SharedDbEnv.cpp:619:
Freeze::DatabaseException:<br>
DbEnv::open: DB_RUNRECOVERY: Fatal
error, run database recovery'<br>
-'The OMERO.master service terminated
with service-specific error Incorrect
function..'<br>
<br>
Hope that helps,<br>
A.<br>
<br>
<div class="moz-cite-prefix">On
17/09/2014 13:57, Anatole Chessel
wrote:<br>
</div>
<blockquote
cite="mid:54198540.4000403@gurdon.cam.ac.uk"
type="cite">Hi all,<br>
<br>
I seem to be having the exact same
problem. I am trying to upgrade from
4.4 to 5.0.4 on a windows server
2008R2; after trying without success
the OME compiled ice3.5/python2.7
64bit (full thread:
<a moz-do-not-send="true"
class="moz-txt-link-freetext"
href="http://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7629&start=10">http://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7629&start=10</a>
in short omero eventually worked but
omero.web did not), I tried
ice3.4/python2.6 32bits with the
same issues as Jason: 'Failed to
startup some components after 300
seconds' and no logs, and launching
manually gives a logfile with the
same error he just reported...<br>
<br>
Many thanks,<br>
A.<br>
<br>
<br>
<div class="moz-cite-prefix">On
17/09/2014 13:36, Kotecki, Jason
wrote:<br>
</div>
<blockquote
cite="mid:AD2C4910C613EC4CB58CBF8BB44282C41B96D82A@VAIEXMB01.vai.org"
type="cite">
<pre wrap="">Josh, attached is the task list. Also, I ran the command for blitz manually and that actually created a log file.
Thanks,
Jason
</pre>
</blockquote>
</blockquote>
</div>
</div>
</blockquote>
</span></blockquote>
<br>
(...)<br>
<br>
<pre class="moz-signature" cols="72">--
Anatole Chessel, PhD
Research associate
University of Cambridge
Tennis Court Road, Cambridge CB2 1PD
tel: +44 (0)1223 334065</pre>
</div>
</div>
</blockquote>
</span><br>
<span style="font-size:10pt;">The University of Dundee
is a registered Scottish Charity, No: SC015096</span><br>
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</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Anatole Chessel, PhD
Research associate
University of Cambridge
Tennis Court Road, Cambridge CB2 1PD
tel: +44 (0)1223 334065</pre>
</div>
</div>
</blockquote>
</span><br>
<span style="font-size:10pt;">The University of Dundee is a
registered Scottish Charity, No: SC015096</span>
<br>
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</pre>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Anatole Chessel, PhD
Research associate
University of Cambridge
Tennis Court Road, Cambridge CB2 1PD
tel: +44 (0)1223 334065</pre>
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