[ome-users] MetaSystems vsi file

LIM Soon Yew John (IMB) john.lim at imb.a-star.edu.sg
Mon Jul 21 11:33:32 BST 2014


Dear All,

I had encounter a problem opening the .vsi image from MetaSystems attached in the link below:
https://www.dropbox.com/s/kwmca936x3nvi5j/SS1-Case-33.Ki67_M~B.vsi

When I try to open the .vsi format slide scanning data from MetaSystems using Bio-format Importer in Fiji, I got the following error message below:

java.lang.IllegalArgumentException: Invalid series: 0
 at loci.formats.FormatReader.seriesToCoreIndex(FormatReader.java:1196)
 at loci.formats.FormatReader.setSeries(FormatReader.java:925)
 at loci.formats.MetadataTools.populatePixels(MetadataTools.java:173)
 at loci.formats.MetadataTools.populatePixels(MetadataTools.java:97)
 at loci.formats.in.CellSensReader.initFile(CellSensReader.java:456)
 at loci.formats.FormatReader.setId(FormatReader.java:1315)
 at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:494)
 at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
 at loci.plugins.in.Importer.showDialogs(Importer.java:141)
 at loci.plugins.in.Importer.run(Importer.java:79)
 at loci.plugins.LociImporter.run(LociImporter.java:81)
 at ij.IJ.runUserPlugIn(IJ.java:199)
 at ij.IJ.runPlugIn(IJ.java:163)
 at ij.IJ.runPlugIn(IJ.java:152)
 at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:421)
 at HandleExtraFileTypes.run(HandleExtraFileTypes.java:57)
 at ij.IJ.runUserPlugIn(IJ.java:199)
 at ij.IJ.runPlugIn(IJ.java:163)
 at ij.IJ.runPlugIn(IJ.java:152)
 at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:454)
 at ij.io.Opener.openImage(Opener.java:311)
 at ij.io.Opener.openImage(Opener.java:334)
 at ij.io.Opener.open(Opener.java:144)
 at ij.io.Opener.openAndAddToRecent(Opener.java:247)
 at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:176)
 at ij.plugin.DragAndDrop.run(DragAndDrop.java:152)
 at java.lang.Thread.run(Thread.java:662)

Can I used Bio-format Importer to open MetaSystems .vsi file?

Best Regards and Thank You,
John


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