[ome-users] missing images reading Nikon nd2 files

[Roger Leigh]

On 16/07/14 08:59, Karsten wrote:
>
> Hi Melissa, hi Roger,
>
> Finally I have uploaded two nd2 files. One, the crashing, to the ftp server from Melissa and one, with ~106 series, one rgb per serie via the uploader, done by a colleague. That is an example for the missing (last) image.
>
> Perhaps you could also have a look to the output of metadata. Series are numbered but seemingly ordered lexically!

For the latter image I see:

x = 1280
y = 960
c = 3
series = 104 (0..103)

It looks like it's missing the last two planes?  So it's definitely seen
as 106 series in Nikon Elements?  Are there any other problems here
relating to the image dimensionality e.g. for channels or z/t?


Thanks,
Roger

--
Dr Roger Leigh -- Open Microscopy Environment
Wellcome Trust Centre for Gene Regulation and Expression,
College of Life Sciences, University of Dundee, Dow Street,
Dundee DD1 5EH Scotland UK   Tel: (01382) 386364

The University of Dundee is a registered Scottish Charity, No: SC015096