[ome-users] missing images reading Nikon nd2 files

[Roger Leigh]

On 14/07/14 21:25, Karsten wrote:
>
> Importing nd2 files (two) delivers one (3-channel) image less than the NIS Elements Viewer.
>
> This happens under ImageJ, Fiji and the commandline tool showinf.
>
> The meta data show the reduced number of images, still the list of the scanning table coordinates show the full number of images extended by a constant dummy coordinate to the number of (1-channel) images found from bioformats software.
>
> I attache the output of showinf.
>
> The second file delivers also one image less than the Nikon Viewer. Additionally the metadata show a different structure by dividing the list of images in a large number of series. According the microscope users, they did not change anything saving the second data file.
>
> One image less is possibly not so important. However for the sake of correctness it could be improved.
>
> Thanks in advance for any help

Dear Karsten,

Would it be possible for you to upload this image (or any sample image
demonstrating this problem) using
http://qa.openmicroscopy.org.uk/qa/upload/ so that we can investigate
the problem further?


Many thanks,
Roger Leigh

--
Dr Roger Leigh -- Open Microscopy Environment
Wellcome Trust Centre for Gene Regulation and Expression,
College of Life Sciences, University of Dundee, Dow Street,
Dundee DD1 5EH Scotland UK   Tel: (01382) 386364

The University of Dundee is a registered Scottish Charity, No: SC015096