[ome-users] Error (EXTERNAL IP): /webadmin/load_drivespace/
Aleksandra Tarkowska
aleksandrat at lifesci.dundee.ac.uk
Tue Sep 27 12:52:16 BST 2011
Hi Leon
I need to investigate, what exactly is raising an exception in this query. There is a new ticket for that http://trac.openmicroscopy.org.uk/ome/ticket/6863
I will be in touch with you shortly.
Thanks
Ola
On 21 Sep 2011, at 13:39, Leon Kolchinsky wrote:
> Hello Will,
>
> Actually the DB is full of images and I'm not getting the previous e-mails anymore.
> But I still can't see usage stats ;(
> I suspect that it's connected somehow to the new LDAP modules in ver. 4.3.2.
> Since new modules checking for users in the LDAP every time they log-in into the system, I presume that the mechanism implemented here the same.
> No users found and it's just failing ;(
>
>
> I'm attaching screenshot.
> Those 2 users displayed aren't actually in our LDAP anymore.
> They left several months ago but their details still in OMERO DB.
>
> Here is a snap from Blitz-0.log:
>
> 2011-09-21 22:27:12,659 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:27:12,664 INFO [ ome.security.basic.EventHandler] (3-thread-2) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:27:12,671 INFO [ org.perf4j.TimingLogger] (3-thread-2) start[1316608032660] time[11] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:27:12,671 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:27:12,672 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(a8fae106-e386-441d-89ce-8b76358d6571)
> 2011-09-21 22:27:12,672 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:27:12,673 INFO [ ome.security.basic.EventHandler] (3-thread-2) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:27:12,683 INFO [ org.perf4j.TimingLogger] (3-thread-2) start[1316608032672] time[11] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:27:12,683 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:27:12,684 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(00aeeeb1-0de5-4090-91f6-5f801a2b2d9c)
> 2011-09-21 22:27:12,684 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:27:12,686 INFO [ ome.security.basic.EventHandler] (3-thread-2) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:27:12,694 INFO [ org.perf4j.TimingLogger] (3-thread-2) start[1316608032686] time[8] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:27:12,695 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Rslt: (ome.model.meta.Experimenter:Id_1, ome.model.meta.ExperimenterGroup:Id_2, [2], ... 4 more)
> 2011-09-21 22:27:12,695 INFO [ org.perf4j.TimingLogger] (3-thread-2) start[1316608032635] time[60] tag[omero.sessions.synchronization]
> 2011-09-21 22:27:12,695 INFO [ome.services.sessions.state.SessionCache] (3-thread-2) Synchronization took 60 ms.
> 2011-09-21 22:29:12,632 INFO [ome.services.sessions.state.SessionCache] (3-thread-2) Synchronizing session cache. Count = 5
> 2011-09-21 22:29:12,632 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(760f5b02-5745-4f8b-91b5-0b96db53aaca)
> 2011-09-21 22:29:12,632 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:29:12,642 INFO [ ome.security.basic.EventHandler] (3-thread-2) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:29:12,658 INFO [ org.perf4j.TimingLogger] (3-thread-2) start[1316608152632] time[26] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:29:12,658 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:29:12,659 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(aca27771-5fb5-4bc7-91ae-29009b9d2be2)
> 2011-09-21 22:29:12,659 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:29:12,660 INFO [ ome.security.basic.EventHandler] (3-thread-2) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:29:12,672 INFO [ org.perf4j.TimingLogger] (3-thread-2) start[1316608152659] time[13] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:29:12,672 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:29:12,672 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(ddf0f78c-175f-498c-9abd-92e68f9bf8fd)
> 2011-09-21 22:29:12,672 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:29:12,673 INFO [ ome.security.basic.EventHandler] (3-thread-2) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:29:12,681 INFO [ org.perf4j.TimingLogger] (3-thread-2) start[1316608152672] time[9] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:29:12,681 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:29:12,682 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(a8fae106-e386-441d-89ce-8b76358d6571)
> 2011-09-21 22:29:12,682 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:29:12,683 INFO [ ome.security.basic.EventHandler] (3-thread-2) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:29:12,692 INFO [ org.perf4j.TimingLogger] (3-thread-2) start[1316608152682] time[10] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:29:12,692 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:29:12,692 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(00aeeeb1-0de5-4090-91f6-5f801a2b2d9c)
> 2011-09-21 22:29:12,692 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:29:12,696 INFO [ ome.security.basic.EventHandler] (3-thread-2) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:29:12,703 INFO [ org.perf4j.TimingLogger] (3-thread-2) start[1316608152692] time[11] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:29:12,703 INFO [ ome.services.util.ServiceHandler] (3-thread-2) Rslt: (ome.model.meta.Experimenter:Id_1, ome.model.meta.ExperimenterGroup:Id_2, [2], ... 4 more)
> 2011-09-21 22:29:12,703 INFO [ org.perf4j.TimingLogger] (3-thread-2) start[1316608152632] time[71] tag[omero.sessions.synchronization]
> 2011-09-21 22:29:12,703 INFO [ome.services.sessions.state.SessionCache] (3-thread-2) Synchronization took 71 ms.
> 2011-09-21 22:29:46,688 INFO [ ome.services.util.ServiceHandler] (l.Server-7) Meth: interface ome.api.IQuery.findAllByQuery
> 2011-09-21 22:29:46,688 INFO [ ome.services.util.ServiceHandler] (l.Server-7) Args: [select g from ExperimenterGroup as g where g.name not in (:default_names), PARAMS:F(l1):default_names=ArrayList(3) ]
> 2011-09-21 22:29:46,692 INFO [ ome.security.basic.EventHandler] (l.Server-7) Auth: user=0,group=0,event=null(User),sess=760f5b02-5745-4f8b-91b5-0b96db53aaca
> 2011-09-21 22:29:46,697 INFO [ org.perf4j.TimingLogger] (l.Server-7) start[1316608186688] time[9] tag[omero.call.success.ome.logic.QueryImpl.findAllByQuery]
> 2011-09-21 22:29:46,697 INFO [ ome.services.util.ServiceHandler] (l.Server-7) Rslt: (ome.model.meta.ExperimenterGroup:Id_4)
> 2011-09-21 22:29:46,703 INFO [ ome.services.util.ServiceHandler] (l.Server-9) Meth: interface ome.api.IQuery.findAllByQuery
> 2011-09-21 22:29:46,703 INFO [ ome.services.util.ServiceHandler] (l.Server-9) Args: [select distinct obj from Experimenter as obj left outer join fetch obj.groupExperimenterMap as map left outer join fetch map.parent g, PARAMS]
> 2011-09-21 22:29:46,705 INFO [ ome.security.basic.EventHandler] (l.Server-9) Auth: user=0,group=0,event=null(User),sess=760f5b02-5745-4f8b-91b5-0b96db53aaca
> 2011-09-21 22:29:46,721 INFO [ org.perf4j.TimingLogger] (l.Server-9) start[1316608186703] time[18] tag[omero.call.success.ome.logic.QueryImpl.findAllByQuery]
> 2011-09-21 22:29:46,721 INFO [ ome.services.util.ServiceHandler] (l.Server-9) Rslt: (ome.model.meta.Experimenter:Id_103, ome.model.meta.Experimenter:Id_257, ome.model.meta.Experimenter:Id_152, ... 40 more)
> 2011-09-21 22:29:46,810 INFO [ ome.services.util.ServiceHandler] (l.Server-7) Meth: interface ome.api.IAdmin.lookupLdapAuthExperimenters
> 2011-09-21 22:29:46,810 INFO [ ome.services.util.ServiceHandler] (l.Server-7) Args: ()
> 2011-09-21 22:29:46,813 INFO [ ome.security.basic.EventHandler] (l.Server-7) Auth: user=0,group=0,event=null(User),sess=760f5b02-5745-4f8b-91b5-0b96db53aaca
> 2011-09-21 22:29:46,816 INFO [ org.perf4j.TimingLogger] (l.Server-7) start[1316608186810] time[6] tag[omero.call.success.ome.logic.AdminImpl.lookupLdapAuthExperimenters]
> 2011-09-21 22:29:46,816 INFO [ ome.services.util.ServiceHandler] (l.Server-7) Rslt: ({dn=cn=Russell Sim,ou=Monash e-Research Centre,ou=Administration,ou=Staff,o=Monash University,c=au, experimenter_id=2}, {dn=cn=Raymond Lau,ou=Monash e-Research Centre,ou=Administration,ou=Staff,o=Monash University,c=au, experimenter_id=52}, {dn=cn=Nigel Holdgate,ou=Monash e-Research Centre,ou=Administration,ou=Staff,o=Monash University,c=au, experimenter_id=53}, ... 29 more)
> 2011-09-21 22:29:56,308 INFO [ ome.services.util.ServiceHandler] (l.Server-1) Meth: interface ome.api.IQuery.findAllByQuery
> 2011-09-21 22:29:56,308 INFO [ ome.services.util.ServiceHandler] (l.Server-1) Args: [select g from ExperimenterGroup as g where g.name not in (:default_names), PARAMS:F(l1):default_names=ArrayList(3) ]
> 2011-09-21 22:29:56,311 INFO [ ome.security.basic.EventHandler] (l.Server-1) Auth: user=0,group=0,event=null(User),sess=760f5b02-5745-4f8b-91b5-0b96db53aaca
> 2011-09-21 22:29:56,314 INFO [ org.perf4j.TimingLogger] (l.Server-1) start[1316608196308] time[6] tag[omero.call.success.ome.logic.QueryImpl.findAllByQuery]
> 2011-09-21 22:29:56,314 INFO [ ome.services.util.ServiceHandler] (l.Server-1) Rslt: (ome.model.meta.ExperimenterGroup:Id_4)
> 2011-09-21 22:29:56,319 INFO [ ome.services.util.ServiceHandler] (l.Server-2) Meth: interface ome.api.IQuery.findByQuery
> 2011-09-21 22:29:56,319 INFO [ ome.services.util.ServiceHandler] (l.Server-2) Args: [select distinct obj from Experimenter as obj left outer join fetch obj.groupExperimenterMap as map left outer join fetch map.parent g where obj.id in (:ids), PARAMS:ids=ArrayList(1) ]
> 2011-09-21 22:29:56,321 INFO [ ome.security.basic.EventHandler] (l.Server-2) Auth: user=0,group=0,event=null(User),sess=760f5b02-5745-4f8b-91b5-0b96db53aaca
> 2011-09-21 22:29:56,327 INFO [ org.perf4j.TimingLogger] (l.Server-2) start[1316608196319] time[8] tag[omero.call.success.ome.logic.QueryImpl.findByQuery]
> 2011-09-21 22:29:56,327 INFO [ ome.services.util.ServiceHandler] (l.Server-2) Rslt: ome.model.meta.Experimenter:Id_53
> 2011-09-21 22:29:56,333 INFO [ ome.services.util.ServiceHandler] (l.Server-0) Meth: interface ome.api.IAdmin.lookupLdapAuthExperimenter
> 2011-09-21 22:29:56,333 INFO [ ome.services.util.ServiceHandler] (l.Server-0) Args: [53]
> 2011-09-21 22:29:56,334 INFO [ ome.security.basic.EventHandler] (l.Server-0) Auth: user=0,group=0,event=null(User),sess=760f5b02-5745-4f8b-91b5-0b96db53aaca
> 2011-09-21 22:29:56,340 INFO [ org.perf4j.TimingLogger] (l.Server-0) start[1316608196333] time[7] tag[omero.call.success.ome.logic.AdminImpl.lookupLdapAuthExperimenter]
> 2011-09-21 22:29:56,340 INFO [ ome.services.util.ServiceHandler] (l.Server-0) Rslt: cn=Nigel Holdgate,ou=Monash e-Research Centre,ou=Administration,ou=Staff,o=Monash University,c=au
> 2011-09-21 22:29:56,341 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Meth: interface ome.api.IQuery.findAllByQuery
> 2011-09-21 22:29:56,341 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Args: [select distinct obj from ExperimenterGroup as obj left outer join fetch obj.groupExperimenterMap as map left outer join fetch map.child e, PARAMS]
> 2011-09-21 22:29:56,343 INFO [ ome.security.basic.EventHandler] (l.Server-8) Auth: user=0,group=0,event=null(User),sess=760f5b02-5745-4f8b-91b5-0b96db53aaca
> 2011-09-21 22:29:56,357 INFO [ org.perf4j.TimingLogger] (l.Server-8) start[1316608196341] time[16] tag[omero.call.success.ome.logic.QueryImpl.findAllByQuery]
> 2011-09-21 22:29:56,357 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Rslt: (ome.model.meta.ExperimenterGroup:Id_53, ome.model.meta.ExperimenterGroup:Id_4, ome.model.meta.ExperimenterGroup:Id_154, ... 6 more)
> 2011-09-21 22:30:00,024 INFO [ ome.services.blitz.fire.SessionManagerI] (3-thread-4) Performing requestHeartbeats
> 2011-09-21 22:30:13,018 INFO [ ome.services.blitz.fire.Ring] (3-thread-5) Checking cluster
> 2011-09-21 22:30:13,019 INFO [ ome.services.blitz.fire.Registry] (3-thread-5) Found 1 cluster node(s) : [ClusterNode/ddf0f78c-175f-498c-9abd-92e68f9bf8fd -t:tcp -h 130.194.245.188 -p 52943]
> 2011-09-21 22:30:13,023 INFO [ ome.services.blitz.fire.Ring] (3-thread-5) Got 1 cluster uuids : [ddf0f78c-175f-498c-9abd-92e68f9bf8fd]
> 2011-09-21 22:30:13,025 INFO [ ome.services.util.ServiceHandler] (3-thread-5) Executor.doWork -- ome.services.blitz.fire.Ring.getManagerList
> 2011-09-21 22:30:13,025 INFO [ ome.services.util.ServiceHandler] (3-thread-5) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:30:13,025 INFO [ ome.security.basic.EventHandler] (3-thread-5) Auth: user=0,group=0,event=null(Internal),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:30:13,037 INFO [ org.perf4j.TimingLogger] (3-thread-5) start[1316608213025] time[12] tag[omero.call.success.ome.services.blitz.fire.Ring$2.doWork]
> 2011-09-21 22:30:13,040 INFO [ ome.services.util.ServiceHandler] (3-thread-5) Rslt: (ddf0f78c-175f-498c-9abd-92e68f9bf8fd)
> 2011-09-21 22:31:12,646 INFO [ome.services.sessions.state.SessionCache] (3-thread-1) Synchronizing session cache. Count = 5
> 2011-09-21 22:31:12,646 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(760f5b02-5745-4f8b-91b5-0b96db53aaca)
> 2011-09-21 22:31:12,646 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:31:12,646 INFO [ ome.security.basic.EventHandler] (3-thread-1) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:31:12,657 INFO [ org.perf4j.TimingLogger] (3-thread-1) start[1316608272646] time[11] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:31:12,657 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:31:12,657 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(aca27771-5fb5-4bc7-91ae-29009b9d2be2)
> 2011-09-21 22:31:12,658 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:31:12,660 INFO [ ome.security.basic.EventHandler] (3-thread-1) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:31:12,669 INFO [ org.perf4j.TimingLogger] (3-thread-1) start[1316608272658] time[11] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:31:12,670 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:31:12,671 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(ddf0f78c-175f-498c-9abd-92e68f9bf8fd)
> 2011-09-21 22:31:12,671 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:31:12,673 INFO [ ome.security.basic.EventHandler] (3-thread-1) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:31:12,681 INFO [ org.perf4j.TimingLogger] (3-thread-1) start[1316608272671] time[10] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:31:12,682 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:31:12,684 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(a8fae106-e386-441d-89ce-8b76358d6571)
> 2011-09-21 22:31:12,684 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:31:12,684 INFO [ ome.security.basic.EventHandler] (3-thread-1) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:31:12,692 INFO [ org.perf4j.TimingLogger] (3-thread-1) start[1316608272684] time[8] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:31:12,692 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:31:12,693 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(00aeeeb1-0de5-4090-91f6-5f801a2b2d9c)
> 2011-09-21 22:31:12,693 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:31:12,695 INFO [ ome.security.basic.EventHandler] (3-thread-1) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:31:12,707 INFO [ org.perf4j.TimingLogger] (3-thread-1) start[1316608272693] time[14] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:31:12,707 INFO [ ome.services.util.ServiceHandler] (3-thread-1) Rslt: (ome.model.meta.Experimenter:Id_1, ome.model.meta.ExperimenterGroup:Id_2, [2], ... 4 more)
> 2011-09-21 22:31:12,707 INFO [ org.perf4j.TimingLogger] (3-thread-1) start[1316608272646] time[61] tag[omero.sessions.synchronization]
> 2011-09-21 22:31:12,707 INFO [ome.services.sessions.state.SessionCache] (3-thread-1) Synchronization took 61 ms.
> 2011-09-21 22:33:00,014 INFO [ ome.services.blitz.fire.SessionManagerI] (3-thread-1) Performing requestHeartbeats
> 2011-09-21 22:33:12,649 INFO [ome.services.sessions.state.SessionCache] (3-thread-4) Synchronizing session cache. Count = 5
> 2011-09-21 22:33:12,649 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(760f5b02-5745-4f8b-91b5-0b96db53aaca)
> 2011-09-21 22:33:12,649 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:33:12,658 INFO [ ome.security.basic.EventHandler] (3-thread-4) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:33:12,674 INFO [ org.perf4j.TimingLogger] (3-thread-4) start[1316608392649] time[25] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:33:12,674 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:33:12,675 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(aca27771-5fb5-4bc7-91ae-29009b9d2be2)
> 2011-09-21 22:33:12,675 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:33:12,677 INFO [ ome.security.basic.EventHandler] (3-thread-4) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:33:12,687 INFO [ org.perf4j.TimingLogger] (3-thread-4) start[1316608392675] time[12] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:33:12,687 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:33:12,687 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(ddf0f78c-175f-498c-9abd-92e68f9bf8fd)
> 2011-09-21 22:33:12,687 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:33:12,689 INFO [ ome.security.basic.EventHandler] (3-thread-4) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:33:12,698 INFO [ org.perf4j.TimingLogger] (3-thread-4) start[1316608392687] time[11] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:33:12,698 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:33:12,698 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(a8fae106-e386-441d-89ce-8b76358d6571)
> 2011-09-21 22:33:12,698 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:33:12,700 INFO [ ome.security.basic.EventHandler] (3-thread-4) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:33:12,708 INFO [ org.perf4j.TimingLogger] (3-thread-4) start[1316608392698] time[10] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:33:12,709 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
> 2011-09-21 22:33:12,711 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Executor.doWork -- ome.services.sessions.SessionManagerImpl.reload(00aeeeb1-0de5-4090-91f6-5f801a2b2d9c)
> 2011-09-21 22:33:12,711 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Args: [null, InternalSF at 1831491676]
> 2011-09-21 22:33:12,711 INFO [ ome.security.basic.EventHandler] (3-thread-4) Auth: user=0,group=0,event=null(Sessions),sess=ddf0f78c-175f-498c-9abd-92e68f9bf8fd
> 2011-09-21 22:33:12,719 INFO [ org.perf4j.TimingLogger] (3-thread-4) start[1316608392711] time[8] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$6.doWork]
> 2011-09-21 22:33:12,720 INFO [ ome.services.util.ServiceHandler] (3-thread-4) Rslt: (ome.model.meta.Experimenter:Id_1, ome.model.meta.ExperimenterGroup:Id_2, [2], ... 4 more)
> 2011-09-21 22:33:12,720 INFO [ org.perf4j.TimingLogger] (3-thread-4) start[1316608392649] time[71] tag[omero.sessions.synchronization]
> 2011-09-21 22:33:12,720 INFO [ome.services.sessions.state.SessionCache] (3-thread-4) Synchronization took 71 ms.
>
> Any patches?
>
> Thanks,
> Leon Kolchinsky
>
>
>
> On Wed, Sep 21, 2011 at 21:54, Will Moore <will at lifesci.dundee.ac.uk> wrote:
> Hi Leon,
>
> This appears to be a bug when trying to calculate the Drive Space usage when there are no images in the database.
>
> Hopefully you won't see this error once you have imported some images?
>
> Should be an easy fix anyway. I'll create a ticket..
>
> Cheers,
>
> Will.
>
>
> On 20 Sep 2011, at 13:52, Leon Kolchinsky wrote:
>
>> Hello,
>>
>> I'm testing new version of Omero Server 4.3.2
>> When logged-in as root to webadmin interface I click on "Drive Space" and get this message "Could not load piechart. Please contact Administrator".
>> I'm also getting the following e-mail:
>>
>>
>> Traceback (most recent call last):
>>
>> File "/srv/omeroserver/lib/python/django/core/handlers/base.py", line 92, in get_response
>> response = callback(request, *callback_args, **callback_kwargs)
>>
>> File "/srv/omeroserver/lib/python/omeroweb/webadmin/views.py", line 168, in wrapped
>> return f(request, *args, **kwargs)
>>
>> File "/srv/omeroserver/lib/python/omeroweb/webadmin/views.py", line 871, in load_drivespace
>> rv = usersData(conn, offset)
>>
>> File "/srv/omeroserver/lib/python/omeroweb/webadmin/controller/drivespace.py", line 99, in usersData
>> "where m.child.id in (:pids)", p2, ctx)
>>
>> File "/srv/omeroserver/lib/python/omero/gateway/__init__.py", line 2959, in __call__
>> return self.handle_exception(e, *args, **kwargs)
>>
>> File "/srv/OMERO.server-Beta-4.3.2/lib/python/omeroweb/webclient/webclient_gateway.py", line 1652, in handle_exception
>> e, *args, **kwargs)
>>
>> File "/srv/omeroserver/lib/python/omero/gateway/__init__.py", line 2956, in __call__
>> return self.f(*args, **kwargs)
>>
>> File "/srv/omeroserver/lib/python/omero_api_IQuery_ice.py", line 138, in findAllByQuery
>> return _M_omero.api.IQuery._op_findAllByQuery.invoke(self, ((query, params), _ctx))
>>
>> ApiUsageException: exception ::omero::ApiUsageException
>> {
>> serverStackTrace = ome.conditions.ApiUsageException: unexpected end of subtree [select m from ome.model.core.PixelsOriginalFileMap as m join fetch m.parent where m.child.id in ()]; nested exception is org.hibernate.hql.ast.QuerySyntaxException: unexpected end of subtree [select m from ome.model.core.PixelsOriginalFileMap as m join fetch m.parent where m.child.id in ()]
>> at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:660)
>> at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)
>> at org.springframework.orm.hibernate3.HibernateTemplate.doExecute(HibernateTemplate.java:411)
>> at org.springframework.orm.hibernate3.HibernateTemplate.execute(HibernateTemplate.java:339)
>> at ome.logic.QueryImpl.execute(QueryImpl.java:142)
>> at ome.logic.QueryImpl.findAllByQuery(QueryImpl.java:392)
>> at sun.reflect.GeneratedMethodAccessor293.invoke(Unknown Source)
>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>> at java.lang.reflect.Method.invoke(Method.java:597)
>> at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
>> at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
>> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
>> at ome.security.basic.EventHandler.invoke(EventHandler.java:150)
>> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
>> at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
>> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
>> at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
>> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
>> at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
>> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
>> at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
>> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
>> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
>> at $Proxy72.findAllByQuery(Unknown Source)
>> at sun.reflect.GeneratedMethodAccessor293.invoke(Unknown Source)
>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>> at java.lang.reflect.Method.invoke(Method.java:597)
>> at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
>> at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
>> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
>> at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
>> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
>> at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
>> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
>> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
>> at $Proxy72.findAllByQuery(Unknown Source)
>> at sun.reflect.GeneratedMethodAccessor320.invoke(Unknown Source)
>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>> at java.lang.reflect.Method.invoke(Method.java:597)
>> at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
>> at ome.services.throttling.Callback.run(Callback.java:56)
>> at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
>> at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:136)
>> at ome.services.blitz.impl.QueryI.findAllByQuery_async(QueryI.java:66)
>> at omero.api._IQueryTie.findAllByQuery_async(_IQueryTie.java:92)
>> at omero.api._IQueryDisp.___findAllByQuery(_IQueryDisp.java:366)
>> at omero.api._IQueryDisp.__dispatch(_IQueryDisp.java:496)
>> at IceInternal.Incoming.invoke(Incoming.java:159)
>> at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
>> at Ice.ConnectionI.message(ConnectionI.java:972)
>> at IceInternal.ThreadPool.run(ThreadPool.java:577)
>> at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
>> at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
>>
>> serverExceptionClass = ome.conditions.ApiUsageException
>> message = unexpected end of subtree [select m from ome.model.core.PixelsOriginalFileMap as m join fetch m.parent where m.child.id in ()]; nested exception is org.hibernate.hql.ast.QuerySyntaxException: unexpected end of subtree [select m from ome.model.core.PixelsOriginalFileMap as m join fetch m.parent where m.child.id in ()]
>> }
>>
>>
>> <WSGIRequest
>> GET:<QueryDict: {}>,
>> POST:<QueryDict: {}>,
>> COOKIES:{'__utma': '192312886.126904984.1289803522.1316045304.1316486455.52',
>> '__utmz': '192312886.1316486455.52.35.utmcsr=monash.edu|utmccn=(referral)|utmcmd=referral|utmcct=/',
>> 'sessionid': '5fd671309cdddd3b278bf04c5d2f0580'},
>> META:{'CONTENT_TYPE': 'application/json; charset=utf-8',
>> 'DOCUMENT_ROOT': '/srv/webstart',
>> 'GATEWAY_INTERFACE': 'CGI/1.1',
>> 'HTTPS': 'on',
>> 'HTTP_ACCEPT': 'application/json, text/javascript, */*',
>> 'HTTP_ACCEPT_CHARSET': 'ISO-8859-1,utf-8;q=0.7,*;q=0.3',
>> 'HTTP_ACCEPT_ENCODING': 'gzip,deflate,sdch',
>> 'HTTP_ACCEPT_LANGUAGE': 'en-US,en;q=0.8',
>> 'HTTP_CONNECTION': 'keep-alive',
>> 'HTTP_COOKIE': '__utma=203357902.1484366806.1315973805.1315973805.1316391535.2; __utmz=203357902.1315973805.1.1.utmcsr=(direct)|utmccn=(direct)|utmcmd=(none); __utma=192312886.126904984.1289803522.1316045304.1316486455.52; __utmz=192312886.1316486455.52.35.utmcsr=monash.edu|utmccn=(referral)|utmcmd=referral|utmcct=/; sessionid=5fd671309cdddd3b278bf04c5d2f0580',
>> 'HTTP_HOST': 'server.its.monash.edu.au',
>> 'HTTP_REFERER': 'https://server.its.monash.edu.au/webadmin/drivespace/',
>> 'HTTP_USER_AGENT': 'Mozilla/5.0 (Windows NT 5.1) AppleWebKit/535.1 (KHTML, like Gecko) Chrome/14.0.835.163 Safari/535.1',
>> 'HTTP_X_REQUESTED_WITH': 'XMLHttpRequest',
>> 'PATH': '/sbin:/usr/sbin:/bin:/usr/bin',
>> 'PATH_INFO': u'/webadmin/load_drivespace/',
>> 'PATH_TRANSLATED': '/srv/omeroserver/var/omero.fcgi/webadmin/load_drivespace/',
>> 'QUERY_STRING': '',
>> 'REMOTE_ADDR': '110.174.176.101',
>> 'REMOTE_PORT': '4153',
>> 'REQUEST_METHOD': 'GET',
>> 'REQUEST_URI': '/webadmin/load_drivespace/',
>> 'SCRIPT_FILENAME': '/srv/omeroserver/var/omero.fcgi',
>> 'SCRIPT_NAME': u'',
>> 'SERVER_ADDR': '130.194.245.190',
>> 'SERVER_ADMIN': 'root at localhost',
>> 'SERVER_NAME': 'server.its.monash.edu.au',
>> 'SERVER_PORT': '443',
>> 'SERVER_PROTOCOL': 'HTTP/1.1',
>> 'SERVER_SIGNATURE': '<address>Apache/2.2.3 (Red Hat) Server at server.its.monash.edu.au Port 443</address>\n',
>> 'SERVER_SOFTWARE': 'Apache/2.2.3 (Red Hat)',
>> 'wsgi.errors': <flup.server.fcgi_base.TeeOutputStream object at 0x10e30ed0>,
>> 'wsgi.input': <flup.server.fcgi_base.InputStream object at 0x10c98410>,
>> 'wsgi.multiprocess': True,
>> 'wsgi.multithread': False,
>> 'wsgi.run_once': False,
>> 'wsgi.url_scheme': 'https',
>> 'wsgi.version': (1, 0)}>
>>
>>
>> Any idea what the problem is and how to resolve it?
>>
>> P.S.:
>> This worked perfectly in 4.2.2.
>>
>> Cheers,
>> Leon
>> _______________________________________________
>> ome-users mailing list
>> ome-users at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
> William Moore
> Wellcome Trust Centre for Gene Regulation & Expression
> College of Life Sciences
> MSI/WTB/JBC Complex
> University of Dundee
> Dow Street
> Dundee DD1 5EH
> United Kingdom
>
> Phone 01382 386364
> http://openmicroscopy.org
>
>
>
>
>
>
> <2011-09-21_223037.jpg>_______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
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