[ome-users] Errors/Exceptions while staring Omero

[josh.moore at gmx.de]

Nandakumar, Sriramkumar writes:

 > Hi Josh,
 > Thanks for your email. 

Sure.

 > Could you please tell what is corrupted jar/zip?. Are you referring
 > to Omero package or Java? 

I'm not sure if anything is corrupted, but if so, it is most likely a
jar/war file that was unpacked from the zip. If you ran:

  unzip omero.zip

and pressed Ctrl-C or similar, then one of the files may have been
unfinished.

 > I have uploaded few files in Omero. The
 > search option doesnot return any image even if the images are
 > present in the server.  However the search option properly returns
 > the files sometimes. It seems to be very difficult for me to
 > reproduce the problem as it occurs randomly.

Hmmm...perhaps you could give us an example. Something like:

  Image Id = 123
  Image Name = "something"
  Image Description = "something longer"

  Search : what you searched for

If that still doesn't work, you can send me the contents of your
/OMERO/FullText directory zipped together and I'll try to see what's
going on.

Best wishes,
~Josh.

 > Nandakumar, Sriramkumar writes:
 >  > Hi,
 > 
 > Hi Sriram,
 > 
 >  > I am using OMERO Beta 3.2. I am facing few problems in this
 >  > version.
 > 
 > Sorry about the slow response. We've been wrangling with the latest
 > version 4.0.1, but let's see what we can do for 3.2
 > 
 >  > While starting Omero Server, I am seeing lot of exceptions.
 > 
 > The only errors I see in the server.log are related to the web
 > application. Can you use WebAdmin? If that's the only thing which is
 > not functioning properly, this may be a case of a corrupted
 > jar/zip. You might try unpacking them again from the original download.
 > 
 >  > Also the search functionality in Omero Insight is not working
 >  > properly sometimes. I could not able to figure out the exact reason
 >  > for this problems.
 > 
 > Could you tell us what you mean by not working properly? In your log,
 > there are entires of the form:
 > 
 > 2009-04-22 16:17:00,295 ... Indexed: ome.model.core.Pixels:Id_450
 > 
 > 
 > which says the indexer is working. Is it possible that the indexer is
 > too slow? I.e. you uploaded several files and the index wasn't yet
 > up-to-date when you tried searching?
 > 
 >  > I am hereby attaching the server logs in this email. It
 >  > could be really helpful if anyone can assist me in this problem.
 >  >
 >  >
 >  > Thanks & Regards,
 >  > Sriram.
 > 
 > Hope that helps. If not, is upgrading an option for you?
 > ~Josh.