[ome-users] Import metadata from lif image

Mario Valle mvalle at cscs.ch
Thu Jan 31 14:10:56 GMT 2008


If I understand correctly, the metadata are loaded from an imported image into OME.

Take for example the 2007-11-12_L15_AF001.lif Leica image you find under
ftp.cscs.ch/out/mvalle/

For example the loci tool shoinf extracts from this image the following data about the
instrument:

AF_405ex_001 - DMI6000 Turret - Dummy Name (Obj.) - DUMMYNAME: Dummy5
AF_405ex_001 - DMI6000 Turret - Numerical aperture (Obj.) - NumericalAperture: 1.4
AF_405ex_001 - DMI6000 Turret - Objective - Objective: HCX PL APO lambda blue  63.0x1.40
OIL  UV
AF_405ex_001 - DMI6000 Turret - Order number (Obj.) - OrderNumber: 11506192
AF_405ex_001 - DMI6000 Turret - Refraction index - RefractionIndex: 1.518

But inside OME we were not able to find those values anywhere.
Also executing a: select * from objectives;
from inside the database reveals no metadata about objectives has been loaded from all our
tests.

Is this a bug or a limitation of OME?
Thanks for clarifying!
				mario


-- 
Ing. Mario Valle
Visualization Group                              | http://www.cscs.ch/~mvalle
Swiss National Supercomputing Centre (CSCS)      | Tel:  +41 (91) 610.82.60
v. Cantonale Galleria 2, 6928 Manno, Switzerland | Fax:  +41 (91) 610.82.82



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