[ome-users] problems with backup

Tom Macura tm289 at cam.ac.uk
Thu Aug 10 22:27:50 BST 2006


Hi Javi,

Your email couldn't have better timing. We're working on 2.6.0 RC2,  
so fixing bugs is the name of the game.

We don't have Ubuntu installed around here (we use Fedora Core 4).  
But Curtis has Ubuntu and he has replicated your problem and  
discovered this bug is due to the two --directory flags passed to  
tar. I'll re-write ome data backup to use a single --directory flag.  
That will go into RC2.

Tom

On Aug 10, 2006, at 4:44 PM, Javi wrote:

> Hello,
>
> Im fairly new to OME, I installed it on Ubuntu 6.06, now my problem is
> that when I try to backup the system it just won't finnish the  
> process. I
> end up having a tar archive but it seems that a couple steps are  
> missing
> from the backup procedure.
> By the way, I installed the OME 2.6.0 RC1.
>
> This is what I got:
>
>
>
> root at kaa:/home/javi# ome data backup
> Backup to archive [/home/javi/ome_backup_2006-08-10]:
> Warning: You have elected to backup OMEIS. Use the -q flag if this  
> was not
> your intention.
> Be advised that this operation, depending on the size of your OMEIS
> repository (its size and location
> are printed below), is likely to take a long time.
> 348K    /OME/OMEIS
> Continue? [y/n]: y
> ------------
>  OME Backup
> ------------
>
>     \_ Backing up postgress database ome
> su postgres -c '/usr/bin/pg_dump -Fc -o ome > /tmp/omeDB_backup'
>     \_ Backing up OMEIS from /OME/OMEIS
> /bin/tar  -cf '/home/javi/ome_backup_2006- 08-10.tar' --directory /tmp
> OMEmaint omeDB_backup --directory /OME/OMEIS Files Pixels
>
> Couldn't create tar archive: /bin/tar: --directory: Cannot stat: No  
> such
> file or directory
> Died at /usr/local/share/perl/5.8.7/OME/Util/Data/dbAdmin.pm line 226,
> <STDIN> line 2.
> root at kaa:/home/javi#
>
>
>
> Thanks for the help,
> Javier Tibau
>
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> ome-users at lists.openmicroscopy.org.uk
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