[ome-devel] Status of features and fixes

Andrii Iudin andrii at ebi.ac.uk
Tue Jan 31 13:19:31 GMT 2017


Hi Will,

Thanks for implementing the reversion into the OMERO, more reasons for 
us now to look forward to the 5.3.0 release!

Best regards,
Andrii

On 30/01/2017 16:06, William Moore (Staff) wrote:
> Hi Andrii,
>
> In 5.3.0, “reverse intensity” will be supported by the OMERO rendering 
> engine and
> by the clients: See web client PR 
> https://github.com/openmicroscopy/openmicroscopy/pull/4839
>
> The “reverse intensity” can be specified per-channel, and we also 
> support a look-up-table per-channel.
>
>  I’ll leave the detail of Bio-Formats tickets to a Bio-Formats dev, 
> but can tell you that Bio-Formats 5.2.0 will be in OMERO 5.3.0 in March.
>
>  Regards,
>
>    Will.
>
>
>> On 30 Jan 2017, at 10:05, Andrii Iudin <andrii at ebi.ac.uk 
>> <mailto:andrii at ebi.ac.uk>> wrote:
>>
>> Dear OMERO Developers,
>>
>> With the release of 5.3.0 update approaching, I was wondering if you 
>> might, please, tell what is the status of the following features/fixes?
>> - Color inversion API. Initially discussed with William Moore on 
>> 14-01-2016 in ome-devel:
>> http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2016-January/003566.html
>>
>> We have been provided with a script to test, approved it and it has 
>> added to the requirements gathering for further rendering support. 
>> However, as far as I know it is not yet available?
>>
>>
>> - Support of EMPIAR files. There are three tickets for Bio-Formats:
>> https://trac.openmicroscopy.org/ome/ticket/13057 (Reg: dm4 files)
>> https://trac.openmicroscopy.org/ome/ticket/13058 (Reg: mrcs files)
>> https://trac.openmicroscopy.org/ome/ticket/13059 (Reg: Spider files)
>>
>> MRCS and Spider should be implemented in Bio-Formats 5.2.0. Which is 
>> currently not yet supported by OMERO (would be in the March release?).
>> But DM4 has been moved to an enhancement request list. Is this still 
>> planned to be implemented?
>>
>> Many thanks and best regards,
>> Andrii
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>
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