[ome-devel] batch import into OME 5.0.2

[Josh Moore]

Hi Yanling,

On Jun 10, 2014, at 5:44 PM, Yanling Liu wrote:

> Server configuration: Ubuntu 12.04 VM with 3TB NFS storage attached. OME 5
> is installed and the ManagedRepository is located on the 3TB NFS storage.
> 
> When using command line import tool to inject one user folder plus its
> subfolders to one dataset in OME, I have got following error on certain
> TIFF images (file path removed from log info)  :

Would you mind sending the full log (via private email if you'd prefer)? Also having the command-line as you executed it would be useful.


> I have verified the file 51-11.tif exists as
> ManagedRepository/acharyaj_52/2014-06/06/16-43-40.589/51-11.tif. Tried run
> tiffinfo tool again the image file and found no problem. Don't know why OME
> report an existing file as non-exist...

Could you send the output of:

  bin/omero fs repos

and:

  bin/omero config get | grep omero.data.dir

Did the repo recently move locations?


> Thanks,
> Yanling

Cheers,
~Josh