[ome-devel] adding woolz to bioformats

[Melissa Linkert]

Hi Bill,

> I've now got a working Woolz reader (although no lib isolation
> service yet) in
> 
>   components/bio-formats/src/loci/formats/in/WlzReader.java
> 
> which builds fine and I'm looking to add a writer, but there's
> no
> 
>   components/bio-formats/src/loci/formats/out/
> 
> in the repository I cloned.
> 
> *Q* Where should I put WlzWriter.java? and what files do I
> need to modify to add it?

All of the writers are in components/scifio/src/loci/formats/out/, as
they are all BSD licensed.  WlzWriter.java can go there as well, or if
it should be GPL licensed then you can create the
components/bio-formats/src/loci/formats/out directory and add it there.

In either case, components/scifio/src/loci/formats/writers.txt will need
to be updated to include loci.formats.out.WlzWriter.

> I can see
> 
>   components/scifio/src/loci/formats/out/ICSWriter.java
> 
> and I'm planning on using this as an example.
> *Q* is this a reasonable example to use?

Yes, that's a fine example to use.

Regards,
-Melissa

On Mon, Jul 15, 2013 at 02:39:27PM +0100, Bill Hill wrote:
> I've now got a working Woolz reader (although no lib isolation
> service yet) in
> 
>   components/bio-formats/src/loci/formats/in/WlzReader.java
> 
> which builds fine and I'm looking to add a writer, but there's
> no
> 
>   components/bio-formats/src/loci/formats/out/
> 
> in the repository I cloned.
> 
> *Q* Where should I put WlzWriter.java? and what files do I
> need to modify to add it?
> 
> I can see
> 
>   components/scifio/src/loci/formats/out/ICSWriter.java
> 
> and I'm planning on using this as an example.
> *Q* is this a reasonable example to use?
> 
> Thanks once again.
> 
> Cheers,
> Bill
> -- 
> Bill Hill                              : http://www.hgu.mrc.ac.uk
> MRC Human Genetics Unit                : http://www.emouseatlas.org
> MRC IGMM, University of Edinburgh      : Bill.Hill at igmm.ed.ac.uk
> Western General Hospital               : +44-131-3322471x2119
> Crewe Road, Edinburgh EH4 2XU, UK.     : +44-131-4678456
> 
> The University of Edinburgh is a charitable body, registered in
> Scotland, with registration number SC005336.
> 
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