[ome-devel] OMERO scripts...
Jerome Avondo
jeromeavondo at msn.com
Wed Jan 19 11:22:30 GMT 2011
Ahh thanks Josh,
Managed to resolve the issue, I had numpy v1.3.0 that was causing errors in the master.err.
Upgraded to v1.5.0 and all working now. My processor is up and the scripts are running.
Thanks for the help,
Jerome.
> Subject: Re: [ome-devel] OMERO scripts...
> From: josh at glencoesoftware.com
> Date: Mon, 17 Jan 2011 19:51:53 +0100
> CC: ome-devel at lists.openmicroscopy.org.uk
> To: jeromeavondo at msn.com
>
>
> On Jan 17, 2011, at 12:53 PM, Jerome Avondo wrote:
> > Hi Josh,
>
> Hey Jerome,
>
> > I don't seem to have a Processor-0.log... Could it be I haven't started it or something?
>
>
> It may well be missing one of its Python dependencies. Can you also look in or send master.err from the same directory? Until we get the line:
>
>
> > Server: Processor-0 inactive (disabled)
>
>
>
> saying "active", scripts definitely won't work.
> ~Josh.
>
>
> > Did try getting nodes up manually but did say there where already running...
> >
> > And here is the output from diagnostic...
> >
> > ================================================================================
> > OMERO Diagnostics Beta4.2.1-r8614-Beta4.2-b41
> > ================================================================================
> >
> >
> > Commands: java -version 1.6.0 (/usr/bin/java)
> > Commands: python -V 2.6.2 (/usr/bin/python)
> > Commands: icegridnode --version 3.3.1 (/usr/bin/icegridnode)
> > Commands: icegridadmin --version 3.3.1 (/usr/bin/icegridadmin)
> > Commands: psql --version 8.4.4 (/usr/bin/psql)
> >
> > Server: icegridnode running
> > Server: Blitz-0 active (pid = 6747, enabled)
> > Server: DropBox inactive (disabled)
> > Server: FileServer active (pid = 6779, enabled)
> > Server: Indexer-0 active (pid = 6781, enabled)
> > Server: MonitorServer inactive (disabled)
> > Server: OMERO.Glacier2 active (pid = 6783, enabled)
> > Server: OMERO.IceStorm active (pid = 6785, enabled)
> > Server: Processor-0 inactive (disabled)
> > Server: Repository-1 error: node `repo' couldn't be reache d:
> > the node is not active
> > Server: Tables-0 inactive (disabled)
> > Server: TestDropBox inactive (enabled)
> >
> > Log dir: /opt/OMERO.server-Beta-4.2.1/var/log exists
> >
> > Log files: Blitz-0.log 138.0 MB errors=147 warnings=30 3
> > Log files: DropBox.log 4.0 KB errors=12 warnings=0
> > Log files: FileServer.log 1.0 KB
> > Log files: Indexer-0.log 1.0 MB errors=2 warnings=71
> > Log files: MonitorServer.log 5.0 KB errors=6 warnings=0
> > Log files: OMEROweb.log 13.0 KB errors=1 warnings=0
> > Log files: Processor-0.log n/a
> > Log files: Tables-0.log n/a
> > Log files: TestDropBox.log n/a
> > Log files: master.err 11.0 KB
> > Log files: master.out 0.0 KB
> > Log files: node1.err 3.0 MB
> > Log files: node1.out 0.0 KB
> > Log files: node2.err 3.0 MB
> > Log files: node2.out 0.0 KB
> > Log files: Total size 145.66 MB
> >
> > Parsing Blitz-0.log:[line:24] => Server restarted <=
> > Parsing Blitz-0.log:[line:724411] => Server restarted <=
> > Parsing Blitz-0.log:[line:724678] => Server restarted <=
> > Parsing Blitz-0.log:[line:728931] => Server restarted <=
> > Parsing Blitz-0.log:[line:733730] => Server restarted <=
> > Parsing Blitz-0.log:[line:735476] => Server restarted <=
> >
> > Environment:OMERO_HOME=(unset)
> > Environment:OMERO_NODE=(unset)
> > Environment:OMERO_MASTER=(unset)
> > Environment:PATH=/usr/kerberos/sbin:/usr/kerberos/bin:/sbin:/bin:/usr/sbin:/usr/ bin
> > Environment:ICE_HOME=(unset)
> > Environment:LD_LIBRARY_PATH=(unset)
> > Environment:DYLD_LIBRARY_PATH=(unset)
> >
> > OMERO data dir: '/OMERO' Exists? True Is writable? True
> > OMERO.web status... [NOT STARTED]
> > ================================================================================
> >
> >
> >
> > Thanks,
> >
> > Jerome.
> >
> >
> >> Subject: Re: [ome-devel] OMERO scripts...
> >> From: josh at glencoesoftware.com
> >> Date: Wed, 12 Jan 2011 16:36:12 +0100
> >> CC: ome-devel at lists.openmicroscopy.org.uk
> >> To: jeromeavondo at msn.com
> >>
> >> Hi Jerome,
> >>
> >> On Jan 12, 2011, at 2:21 PM, Jerome Avondo wrote:
> >>> Hi all,
> >>>
> >>> Firstly happy new year to everyone!! :)
> >>
> >> Same to you!
> >>
> >>> I am having a few issues in trying the OMERO.script service.
> >>> I am trying to install and run the "Edit_Descriptions.py" example.
> >>>
> >>> I am working with the admin scripts, so I did the following:
> >>>
> >>> I created a new folder called jic_scripts under: lib/scripts/omero/jic_scripts
> >>> I copied in the "Edit_Descriptions.py" file.
> >>>
> >>> Then in OMERO.insight the script is indeed visible, ie: shows up in the drop down menu, but when I try and run it I get the following error:
> >>>
> >>> "Cannot load the script: 1414
> >>> Error: No Processor available
> >>> Please contact your administrator"
> >>>
> >>> And this is all on a 4.2.1 omero install.
> >>>
> >>> Any pearls of wisdom to help me out?
> >>
> >> Could you send us var/log/Processor-0.log as well as var/log/Blitz-0.log? The output of bin/omero admin diagnostics would also be helpful.
> >>
> >> Thanks,
> >> ~Josh.
> >>
> >>> Thanks for your time,
> >>>
> >>> Jerome.
> >>
> >
>
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