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Ahh thanks Josh,<br><br>Managed to resolve the issue, I had numpy v1.3.0 that was causing errors in the master.err.<br>Upgraded to v1.5.0 and all working now. My processor is up and the scripts are running.<br><br>Thanks for the help,<br><br>Jerome.<br><br>> Subject: Re: [ome-devel] OMERO scripts...<br>> From: josh@glencoesoftware.com<br>> Date: Mon, 17 Jan 2011 19:51:53 +0100<br>> CC: ome-devel@lists.openmicroscopy.org.uk<br>> To: jeromeavondo@msn.com<br>> <br>> <br>> On Jan 17, 2011, at 12:53 PM, Jerome Avondo wrote:<br>> > Hi Josh,<br>> <br>> Hey Jerome,<br>> <br>> > I don't seem to have a Processor-0.log... Could it be I haven't started it or something? <br>> <br>> <br>> It may well be missing one of its Python dependencies. Can you also look in or send master.err from the same directory? Until we get the line:<br>> <br>> <br>> > Server: Processor-0 inactive (disabled)<br>> <br>> <br>> <br>> saying "active", scripts definitely won't work.<br>> ~Josh.<br>> <br>> <br>> > Did try getting nodes up manually but did say there where already running...<br>> > <br>> > And here is the output from diagnostic...<br>> > <br>> > ================================================================================<br>> > OMERO Diagnostics Beta4.2.1-r8614-Beta4.2-b41<br>> > ================================================================================<br>> > <br>> > <br>> > Commands: java -version 1.6.0 (/usr/bin/java)<br>> > Commands: python -V 2.6.2 (/usr/bin/python)<br>> > Commands: icegridnode --version 3.3.1 (/usr/bin/icegridnode)<br>> > Commands: icegridadmin --version 3.3.1 (/usr/bin/icegridadmin)<br>> > Commands: psql --version 8.4.4 (/usr/bin/psql)<br>> > <br>> > Server: icegridnode running<br>> > Server: Blitz-0 active (pid = 6747, enabled)<br>> > Server: DropBox inactive (disabled)<br>> > Server: FileServer active (pid = 6779, enabled)<br>> > Server: Indexer-0 active (pid = 6781, enabled)<br>> > Server: MonitorServer inactive (disabled)<br>> > Server: OMERO.Glacier2 active (pid = 6783, enabled)<br>> > Server: OMERO.IceStorm active (pid = 6785, enabled)<br>> > Server: Processor-0 inactive (disabled)<br>> > Server: Repository-1 error: node `repo' couldn't be reache d:<br>> > the node is not active<br>> > Server: Tables-0 inactive (disabled)<br>> > Server: TestDropBox inactive (enabled)<br>> > <br>> > Log dir: /opt/OMERO.server-Beta-4.2.1/var/log exists<br>> > <br>> > Log files: Blitz-0.log 138.0 MB errors=147 warnings=30 3<br>> > Log files: DropBox.log 4.0 KB errors=12 warnings=0 <br>> > Log files: FileServer.log 1.0 KB<br>> > Log files: Indexer-0.log 1.0 MB errors=2 warnings=71 <br>> > Log files: MonitorServer.log 5.0 KB errors=6 warnings=0 <br>> > Log files: OMEROweb.log 13.0 KB errors=1 warnings=0 <br>> > Log files: Processor-0.log n/a<br>> > Log files: Tables-0.log n/a<br>> > Log files: TestDropBox.log n/a<br>> > Log files: master.err 11.0 KB<br>> > Log files: master.out 0.0 KB<br>> > Log files: node1.err 3.0 MB<br>> > Log files: node1.out 0.0 KB<br>> > Log files: node2.err 3.0 MB<br>> > Log files: node2.out 0.0 KB<br>> > Log files: Total size 145.66 MB<br>> > <br>> > Parsing Blitz-0.log:[line:24] => Server restarted <=<br>> > Parsing Blitz-0.log:[line:724411] => Server restarted <=<br>> > Parsing Blitz-0.log:[line:724678] => Server restarted <=<br>> > Parsing Blitz-0.log:[line:728931] => Server restarted <=<br>> > Parsing Blitz-0.log:[line:733730] => Server restarted <=<br>> > Parsing Blitz-0.log:[line:735476] => Server restarted <=<br>> > <br>> > Environment:OMERO_HOME=(unset)<br>> > Environment:OMERO_NODE=(unset)<br>> > Environment:OMERO_MASTER=(unset)<br>> > Environment:PATH=/usr/kerberos/sbin:/usr/kerberos/bin:/sbin:/bin:/usr/sbin:/usr/ bin<br>> > Environment:ICE_HOME=(unset)<br>> > Environment:LD_LIBRARY_PATH=(unset)<br>> > Environment:DYLD_LIBRARY_PATH=(unset)<br>> > <br>> > OMERO data dir: '/OMERO' Exists? True Is writable? True<br>> > OMERO.web status... [NOT STARTED]<br>> > ================================================================================<br>> > <br>> > <br>> > <br>> > Thanks,<br>> > <br>> > Jerome.<br>> > <br>> > <br>> >> Subject: Re: [ome-devel] OMERO scripts...<br>> >> From: josh@glencoesoftware.com<br>> >> Date: Wed, 12 Jan 2011 16:36:12 +0100<br>> >> CC: ome-devel@lists.openmicroscopy.org.uk<br>> >> To: jeromeavondo@msn.com<br>> >> <br>> >> Hi Jerome,<br>> >> <br>> >> On Jan 12, 2011, at 2:21 PM, Jerome Avondo wrote:<br>> >>> Hi all,<br>> >>> <br>> >>> Firstly happy new year to everyone!! :)<br>> >> <br>> >> Same to you!<br>> >> <br>> >>> I am having a few issues in trying the OMERO.script service. <br>> >>> I am trying to install and run the "Edit_Descriptions.py" example.<br>> >>> <br>> >>> I am working with the admin scripts, so I did the following:<br>> >>> <br>> >>> I created a new folder called jic_scripts under: lib/scripts/omero/jic_scripts<br>> >>> I copied in the "Edit_Descriptions.py" file.<br>> >>> <br>> >>> Then in OMERO.insight the script is indeed visible, ie: shows up in the drop down menu, but when I try and run it I get the following error:<br>> >>> <br>> >>> "Cannot load the script: 1414<br>> >>> Error: No Processor available<br>> >>> Please contact your administrator"<br>> >>> <br>> >>> And this is all on a 4.2.1 omero install.<br>> >>> <br>> >>> Any pearls of wisdom to help me out?<br>> >> <br>> >> Could you send us var/log/Processor-0.log as well as var/log/Blitz-0.log? The output of bin/omero admin diagnostics would also be helpful.<br>> >> <br>> >> Thanks,<br>> >> ~Josh.<br>> >> <br>> >>> Thanks for your time,<br>> >>> <br>> >>> Jerome.<br>> >> <br>> > <br>> <br> </body>
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