[ome-devel] OMERO scripts...

[Jerome Avondo]

Hi Josh,

I don't seem to have a Processor-0.log... Could it be I haven't started it or something? 
Did try getting nodes up manually but did say there where already running...
 
And here is the output from diagnostic...

================================================================================
OMERO Diagnostics Beta4.2.1-r8614-Beta4.2-b41
================================================================================


Commands:   java -version                  1.6.0     (/usr/bin/java)
Commands:   python -V                      2.6.2     (/usr/bin/python)
Commands:   icegridnode --version          3.3.1     (/usr/bin/icegridnode)
Commands:   icegridadmin --version         3.3.1     (/usr/bin/icegridadmin)
Commands:   psql --version                 8.4.4     (/usr/bin/psql)

Server:     icegridnode                    running
Server:     Blitz-0                        active (pid = 6747, enabled)
Server:     DropBox                        inactive (disabled)
Server:     FileServer                     active (pid = 6779, enabled)
Server:     Indexer-0                      active (pid = 6781, enabled)
Server:     MonitorServer                  inactive (disabled)
Server:     OMERO.Glacier2                 active (pid = 6783, enabled)
Server:     OMERO.IceStorm                 active (pid = 6785, enabled)
Server:     Processor-0                    inactive (disabled)
Server:     Repository-1                   error: node `repo' couldn't be reache                    d:
the node is not active
Server:     Tables-0                       inactive (disabled)
Server:     TestDropBox                    inactive (enabled)

Log dir:    /opt/OMERO.server-Beta-4.2.1/var/log exists

Log files:  Blitz-0.log                    138.0 MB      errors=147  warnings=30                    3
Log files:  DropBox.log                    4.0 KB        errors=12   warnings=0                     
Log files:  FileServer.log                 1.0 KB
Log files:  Indexer-0.log                  1.0 MB        errors=2    warnings=71                    
Log files:  MonitorServer.log              5.0 KB        errors=6    warnings=0                     
Log files:  OMEROweb.log                   13.0 KB       errors=1    warnings=0                     
Log files:  Processor-0.log                n/a
Log files:  Tables-0.log                   n/a
Log files:  TestDropBox.log                n/a
Log files:  master.err                     11.0 KB
Log files:  master.out                     0.0 KB
Log files:  node1.err                      3.0 MB
Log files:  node1.out                      0.0 KB
Log files:  node2.err                      3.0 MB
Log files:  node2.out                      0.0 KB
Log files:  Total size                     145.66 MB

Parsing Blitz-0.log:[line:24] => Server restarted <=
Parsing Blitz-0.log:[line:724411] => Server restarted <=
Parsing Blitz-0.log:[line:724678] => Server restarted <=
Parsing Blitz-0.log:[line:728931] => Server restarted <=
Parsing Blitz-0.log:[line:733730] => Server restarted <=
Parsing Blitz-0.log:[line:735476] => Server restarted <=

Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:PATH=/usr/kerberos/sbin:/usr/kerberos/bin:/sbin:/bin:/usr/sbin:/usr/                    bin
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)

OMERO data dir: '/OMERO'        Exists? True    Is writable? True
OMERO.web status... [NOT STARTED]
================================================================================



Thanks,

Jerome.


> Subject: Re: [ome-devel] OMERO scripts...
> From: josh at glencoesoftware.com
> Date: Wed, 12 Jan 2011 16:36:12 +0100
> CC: ome-devel at lists.openmicroscopy.org.uk
> To: jeromeavondo at msn.com
> 
> Hi Jerome,
> 
> On Jan 12, 2011, at 2:21 PM, Jerome Avondo wrote:
> > Hi all,
> > 
> > Firstly happy new year to everyone!! :)
> 
> Same to you!
> 
> > I am having a few issues in trying the OMERO.script service. 
> > I am trying to install and run the "Edit_Descriptions.py" example.
> > 
> > I am working with the admin scripts, so I did the following:
> > 
> > I created a new folder called jic_scripts under: lib/scripts/omero/jic_scripts
> > I copied in the "Edit_Descriptions.py" file.
> > 
> > Then in OMERO.insight the script is indeed visible, ie: shows up in the drop down menu, but when I try and run it I get the following error:
> > 
> > "Cannot load the script: 1414
> > Error: No Processor available
> > Please contact your administrator"
> > 
> > And this is all on a 4.2.1 omero install.
> > 
> > Any pearls of wisdom to help me out?
> 
> Could you send us var/log/Processor-0.log as well as var/log/Blitz-0.log? The output of bin/omero admin diagnostics would also be helpful.
> 
> Thanks,
> ~Josh.
> 
> > Thanks for your time,
> > 
> > Jerome.
> 
 		 	   		  
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