[ome-devel] Insight admin, change group, web login etc
Will Moore
will at lifesci.dundee.ac.uk
Sun Jan 16 07:22:38 GMT 2011
Hi Dale,
I am putting this discussion on our e-mail list, so others can help /
benefit from it.
To summarise so far:
- You have some issues with adding new 'admin' users with the
Insight Admin functions - probably a bug?
- You can't log on to webclient / webadmin (using same user/password
as for Insight)
I can help with your question about moving data from one user to
another:
This is not possible at the moment, but we are working on it right
now. http://trac.openmicroscopy.org.uk/omero/ticket/320
The 'OMERO seems slow' issue you mentioned in your first e-mail is
tricky to analyse. Could be connection speed or disk access? Probably
not processing speed since what we were demoing was OMERO running on a
laptop.
Thanks,
Will.
On 15 Jan 2011, at 00:36, Dale Shumaker wrote:
> Hi Will,
>
> I am using the same name and password for both Insight and the web.
>
> Attached is the OMEROweb.log file. The Debug file doesn't exist.
>
> I don't see any difference between the http://localhost:4080/
> webadmin/ and http://localhost:4080/webclient/
>
> The output of bin/omero admin diagnostics:
>
> C:\omero_dist>bin\omero admin diagnostics
>
> =
> =
> =
> =
> =
> =
> =
> =
> =
> =
> ======================================================================
>
> OMERO Diagnostics Beta4.2.2-r8718-Beta4.2-b56
> =
> =
> =
> =
> =
> =
> =
> =
> =
> =
> ======================================================================
>
>
> Commands: java -version 1.6.0 (C:\WINDOWS
> \system32\java.E
> XE)
> Commands: python -V 2.5.5 (C:
> \Python25\python.EXE)
> Commands: icegridnode --version 3.3.1 (C:
> \Ice-3.3.1\bin\icegridno
> de.EXE)
> Commands: icegridadmin --version 3.3.1 (C:
> \Ice-3.3.1\bin\icegridad
> min.EXE)
> Commands: psql --version not found
>
> Server: icegridnode running
> Server: Blitz-0 active (pid = 3652,
> enabled)
> Server: DropBox inactive (disabled)
> Server: FileServer active (pid = 3640,
> enabled)
> Server: Indexer-0 active (pid = 3668,
> enabled)
> Server: MonitorServer active (pid = 3676,
> enabled)
> Server: OMERO.Glacier2 active (pid = 3696,
> enabled)
> Server: OMERO.IceStorm active (pid = 3812,
> enabled)
> Server: Processor-0 active (pid = 3832,
> enabled)
> Server: Repository-1 error: node `repo'
> couldn't be reache
> d:
> the node is not active
> Server: Tables-0 inactive (disabled)
> Server: TestDropBox inactive (enabled)
>
> Log dir: C:\omero_dist\var\log exists
>
> Log files: Blitz-0.log 262.0 MB
> errors=57834 warnings=8
> 194
> Log files: DropBox.log 16.0 KB errors=11
> warnings=7
>
> Log files: FileServer.log 3.0 KB
> Log files: Indexer-0.log 906.0 KB errors=28
> warnings=59
> 0
> Log files: MonitorServer.log 4.0 KB
> Log files: OMEROweb.log 1.0 KB
>
> Log files: Processor-0.log 381.0 KB errors=4
> warnings=51
> 0
> Log files: Tables-0.log n/a
> Log files: TestDropBox.log n/a
> Log files: master.err 0.0 KB
> Log files: master.out 0.0 KB
> Log files: Total size 263.75 MB
>
> Parsing Blitz-0.log:[line:76] => Server restarted <=
> Parsing Blitz-0.log:[line:3339] => Server restarted <=
> Parsing Blitz-0.log:[line:8764] => Server restarted <=
> Parsing Blitz-0.log:[line:25947] => Server restarted <=
> Parsing Blitz-0.log:[line:2592165] => Server restarted <=
> Parsing Blitz-0.log:[line:2592330] => Server restarted <=
>
> Environment:OMERO_HOME=(unset)
> Environment:OMERO_NODE=(unset)
> Environment:OMERO_MASTER=(unset)
> Environment:PATH=C:\Python25\;C:\Program Files\ATI Stream\bin\x86;C:
> \WINDOWS\sys
> tem32;C:\WINDOWS;C:\WINDOWS\system32\wbem;C:\Program Files\ATI
> Technologies\ATI.
> ACE\Core-Static;C:\Ice-3.3.1\bin;C:\Program Files\QuickTime\QTSystem\
> Environment:ICE_HOME=(unset)
> Environment:LD_LIBRARY_PATH=(unset)
> Environment:DYLD_LIBRARY_PATH=(unset)
>
> OMERO data dir: 'D:\\OMERO' Exists? True Is writable? True
> OMERO.web status... DEVELOPMENT: You will have to check status by
> hand!
>
> C:\omero_dist>
>
> I found the Administration tab in Insight and I can create new
> logins there. Since I imported the files originally under the root
> without setting up groups, is it possible to copy the files to a
> newly added person?
>
> Also I created a new group with a login name and password. User is
> an administrator and group owner. If I try to login under that name
> I get this error: Failed to long onto OMERO. Your user account is no
> longer active. Please contact your administrator.
>
> If I try to log back onto OMERO with the root password I get the
> same message. I can only log in if I close Insight, restart insight
> and then I can log back on with the root password.
>
> Creating a normal user, I can log into Insight without a problem.
>
> Thank you for your help,
>
> Dale
>
>
>
>
>
> On Fri, 14 Jan 2011 04:43:23 -0600, Will Moore <will at lifesci.dundee.ac.uk
> > wrote:
>
>> Hi Dale,
>>
>> Glad you've managed to get up and running.
>>
>> I just tried importing a ZVI file and I get the same issue as you.
>> I have created a ticket and cc'd you on it so you should get
>> notified of any progress
>> http://trac.openmicroscopy.org.uk/omero/ticket/3865
>>
>> In the meantime, (in case you haven't seen this yet) here's how to
>> adjust and apply the rendering settings from one image to many
>> images (after import).
>> http://cvs.openmicroscopy.org.uk/snapshots/movies/omero-4-2/mov/Preview_Panel.mov
>>
>>
>> Are you trying the same username & password on web as for Insight?
>> Can you check the web logs?
>> Look for
>> OMERO-HOME/var/log/OMEROweb.log
>> OMERO-HOME/var/log/OMEROweb-DEBUG.log
>>
>> Does logging on at
>> http://localhost:4080/webadmin/
>> give the same response as
>> http://localhost:4080/webclient/ ??
>>
>> You can also try:
>> $ bin/omero admin diagnostics
>> to see if there's anything obvious (can't think what that might be
>> just now).
>>
>> If not, let us know and maybe someone else in the team can direct
>> you!
>>
>> Webadmin is where we have traditionally done the admin stuff
>> (create accounts etc) although we are starting to add this
>> functionality to Insight.
>> If you log in with root to Insight, look under the "Administration"
>> tab on the left.
>>
>> Thanks,
>>
>> Will.
>>
>>
>> On 14 Jan 2011, at 00:07, Dale Shumaker wrote:
>>
>>> Hi Will,
>>>
>>> Thank you for taking the time to go over the details of setting up
>>> Omero. I have gone back and reinstalled everything again. I had
>>> the same problem as previously. The inability to log into Omero
>>> from insight or the importer. After rereading the instructions and
>>> a few messages on the forum I determined that the problem was the
>>> login name. On the first instance of starting Omero, the default
>>> name is admin, but to log in, the name is "root".
>>>
>>> Since realizing the error I have been able to import files and
>>> examine files. I haven't spent a lot of time investigating the
>>> program yet but it appears to be running slowly compared to what
>>> you were showing me. The database only has about 40 GB in ~1600
>>> files right now. Omero is better at handling LSM files than zvi
>>> files at least in determining the colors selected for each
>>> channel. The zvi files only have the first channel in color and
>>> the remainder are in greyscale.
>>>
>>> There still is at least one problem that I am having right now,
>>> logging into Omero.web from the computer that is running omero
>>> server. The login name and password appear to be correct as an
>>> error isn't returned but after I press the login button the splash
>>> screen rapidly disappears and reappears asking for the login
>>> information again. Based on the documentation, using omero.web is
>>> the way to add users.
>>>
>>> Thank you,
>>>
>>> Dale
>>>
William Moore
Wellcome Trust Centre for Gene Regulation & Expression
College of Life Sciences
MSI/WTB/JBC Complex
University of Dundee
Dow Street
Dundee DD1 5EH
United Kingdom
Phone 01382 386364
http://openmicroscopy.org
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