[ome-users] 12-channel Imaging Mass Cytometry -> OMERO

Kölble, Konrad Konrad.Koelble at uk-erlangen.de
Wed Oct 31 13:51:34 GMT 2018


Hi,
recently Fluidigm's Roberto Spada sent me a 12-marker human spleen FFPE 1mm2 section's Hyperion Imaging System dataset at the standard 1um2 resolution including

- an original raw 2017071313_spleen50_1.txt file
- MCD Viewer software which opens such *.txt files for analysis and generation of original .ome.tiff or false color TIFF files
- original raw 16-bit and/or 32-bit .ome.tiff images

Has someone successfully managed to OMEROze pic & metadata output from this interesting instrument 
https://www.fluidigm.com/products/hyperion-imaging-system
for multichannel viewing?

You'll find the 2017071313_spleen50_1.txt, the MCD Viewer (incl. guide), the 16bit tiff and the 32bit tiff images under https://volafile.org/r/q1h07r5m

Cheers
Konrad


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