[ome-users] thumbnails not visible for group members
Jean-Marie Burel (Staff)
j.burel at dundee.ac.uk
Wed Oct 3 14:53:18 BST 2018
Hi Felix
Thanks for reporting the issue
We will need to investigate and see what happened after chown and chgrp
commands.
Did you try to browse the project as the new owner in the new target
group. I assume the new owner is a member of the group.
Cheers
Jmarie
On 02/10/2018, 10:29, "ome-users on behalf of MEYENHOFER Felix"
<ome-users-bounces at lists.openmicroscopy.org.uk on behalf of
felix.meyenhofer at unifr.ch> wrote:
>Hello
>
>I have currently the problem, that the thumbnails of the image data are
>not shown when a group member browses projects and datasets in OMERO.web.
>It seems the only users that can see the thumbnails are administrators.
>
>The re-occuring error is:
>
>2018-10-01 21:19:25,295 WARNI [ omero.gateway]
>(proc.23336) debug():4623 ApiUsageException on <class
>'omeroweb.webclient.webclient_gateway.OmeroWebSafeCallWrapper'> to
><6c637789-a0b3-41d7-896b-b76b5094dfd9omero.api.ThumbnailStore>
>resetDefaults((<ServiceOptsDict: {'omero.session.uuid':
>'e9ab7aeb-7a0a-4cca-a040-7c2c8691563b', 'omero.group': '655',
>'omero.client.uuid': '5fe7868d-f6ba-4bde-b261-b406a25cc331'}>,), {})
>Traceback (most recent call last):
> File "/home/omero/OMERO.py/lib/python/omero/gateway/__init__.py", line
>4641, in __call__
> return self.f(*args, **kwargs)
> File "/home/omero/OMERO.py/lib/python/omero_api_ThumbnailStore_ice.py",
>line 1136, in resetDefaults
> return _M_omero.api.ThumbnailStore._op_resetDefaults.invoke(self,
>((), _ctx))
>ApiUsageException: exception ::omero::ApiUsageException
>{
> serverStackTrace = ome.conditions.ApiUsageException: Unable to reset
>rendering settings in a read-only group for Pixels set id:4341
>at ome.services.ThumbnailBean.resetDefaults(ThumbnailBean.java:1355)
>at sun.reflect.GeneratedMethodAccessor1151.invoke(Unknown Source)
>at
>sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
>pl.java:43)
>at java.lang.reflect.Method.invoke(Method.java:498)
>at
>org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Ao
>pUtils.java:307)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoi
>nt(ReflectiveMethodInvocation.java:183)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:150)
>at ome.security.basic.EventHandler.invoke(EventHandler.java:153)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
>at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at
>org.springframework.transaction.interceptor.TransactionInterceptor.invoke(
>TransactionInterceptor.java:108)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at
>ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilt
>er.java:249)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at
>org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopP
>roxy.java:202)
>at com.sun.proxy.$Proxy98.resetDefaults(Unknown Source)
>at sun.reflect.GeneratedMethodAccessor1151.invoke(Unknown Source)
>at
>sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
>pl.java:43)
>at java.lang.reflect.Method.invoke(Method.java:498)
>at
>org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Ao
>pUtils.java:307)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoi
>nt(ReflectiveMethodInvocation.java:183)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:150)
>at
>ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at
>ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer
>.java:43)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at
>org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopP
>roxy.java:202)
>at com.sun.proxy.$Proxy98.resetDefaults(Unknown Source)
>at sun.reflect.GeneratedMethodAccessor1224.invoke(Unknown Source)
>at
>sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
>pl.java:43)
>at java.lang.reflect.Method.invoke(Method.java:498)
>at
>ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
>at ome.services.throttling.Callback.run(Callback.java:56)
>at
>ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(In
>ThreadThrottlingStrategy.java:56)
>at
>ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAm
>dServant.java:140)
>at
>ome.services.blitz.impl.ThumbnailStoreI.resetDefaults_async(ThumbnailStore
>I.java:131)
>at sun.reflect.GeneratedMethodAccessor1223.invoke(Unknown Source)
>at
>sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
>pl.java:43)
>at java.lang.reflect.Method.invoke(Method.java:498)
>at
>org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Ao
>pUtils.java:307)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoi
>nt(ReflectiveMethodInvocation.java:183)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:150)
>at omero.cmd.CallContext.invoke(CallContext.java:78)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at
>org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopP
>roxy.java:202)
>at com.sun.proxy.$Proxy99.resetDefaults_async(Unknown Source)
>at
>omero.api._ThumbnailStoreTie.resetDefaults_async(_ThumbnailStoreTie.java:1
>68)
>at
>omero.api._ThumbnailStoreDisp.___resetDefaults(_ThumbnailStoreDisp.java:86
>1)
>at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:999)
>at IceInternal.Incoming.invoke(Incoming.java:221)
>at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
>at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
>at Ice.ConnectionI.message(ConnectionI.java:1056)
>at IceInternal.ThreadPool.run(ThreadPool.java:395)
>at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
>at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
>at java.lang.Thread.run(Thread.java:748)
>
> serverExceptionClass = ome.conditions.ApiUsageException
> message = Unable to reset rendering settings in a read-only group for
>Pixels set id:4341
>}
>2018-10-01 21:19:25,296 ERROR [ omero.gateway]
>(proc.23336) getThumbnail():8314 Traceback (most recent call last):
> File "/home/omero/OMERO.py/lib/python/omero/gateway/__init__.py", line
>8257, in getThumbnail
> tb = self._prepareTB(rdefId=rdefId)
> File "/home/omero/OMERO.py/lib/python/omero/gateway/__init__.py", line
>8136, in _prepareTB
> tb.resetDefaults(ctx)
> File "/home/omero/OMERO.py/lib/python/omero/gateway/__init__.py", line
>4644, in __call__
> return self.handle_exception(e, *args, **kwargs)
> File
>"/home/omero/OMERO.py/lib/python/omeroweb/webclient/webclient_gateway.py",
> line 2099, in handle_exception
> e, *args, **kwargs)
> File "/home/omero/OMERO.py/lib/python/omero/gateway/__init__.py", line
>4641, in __call__
> return self.f(*args, **kwargs)
> File "/home/omero/OMERO.py/lib/python/omero_api_ThumbnailStore_ice.py",
>line 1136, in resetDefaults
> return _M_omero.api.ThumbnailStore._op_resetDefaults.invoke(self,
>((), _ctx))
>ApiUsageException: exception ::omero::ApiUsageException
>{
> serverStackTrace = ome.conditions.ApiUsageException: Unable to reset
>rendering settings in a read-only group for Pixels set id:4341
>at ome.services.ThumbnailBean.resetDefaults(ThumbnailBean.java:1355)
>at sun.reflect.GeneratedMethodAccessor1151.invoke(Unknown Source)
>at
>sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
>pl.java:43)
>at java.lang.reflect.Method.invoke(Method.java:498)
>at
>org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Ao
>pUtils.java:307)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoi
>nt(ReflectiveMethodInvocation.java:183)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:150)
>at ome.security.basic.EventHandler.invoke(EventHandler.java:153)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
>at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at
>org.springframework.transaction.interceptor.TransactionInterceptor.invoke(
>TransactionInterceptor.java:108)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at
>ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilt
>er.java:249)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at
>org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopP
>roxy.java:202)
>at com.sun.proxy.$Proxy98.resetDefaults(Unknown Source)
>at sun.reflect.GeneratedMethodAccessor1151.invoke(Unknown Source)
>at
>sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
>pl.java:43)
>at java.lang.reflect.Method.invoke(Method.java:498)
>at
>org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Ao
>pUtils.java:307)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoi
>nt(ReflectiveMethodInvocation.java:183)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:150)
>at
>ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at
>ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer
>.java:43)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at
>org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopP
>roxy.java:202)
>at com.sun.proxy.$Proxy98.resetDefaults(Unknown Source)
>at sun.reflect.GeneratedMethodAccessor1224.invoke(Unknown Source)
>at
>sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
>pl.java:43)
>at java.lang.reflect.Method.invoke(Method.java:498)
>at
>ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
>at ome.services.throttling.Callback.run(Callback.java:56)
>at
>ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(In
>ThreadThrottlingStrategy.java:56)
>at
>ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAm
>dServant.java:140)
>at
>ome.services.blitz.impl.ThumbnailStoreI.resetDefaults_async(ThumbnailStore
>I.java:131)
>at sun.reflect.GeneratedMethodAccessor1223.invoke(Unknown Source)
>at
>sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
>pl.java:43)
>at java.lang.reflect.Method.invoke(Method.java:498)
>at
>org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Ao
>pUtils.java:307)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoi
>nt(ReflectiveMethodInvocation.java:183)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:150)
>at omero.cmd.CallContext.invoke(CallContext.java:78)
>at
>org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Refle
>ctiveMethodInvocation.java:172)
>at
>org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopP
>roxy.java:202)
>at com.sun.proxy.$Proxy99.resetDefaults_async(Unknown Source)
>at
>omero.api._ThumbnailStoreTie.resetDefaults_async(_ThumbnailStoreTie.java:1
>68)
>at
>omero.api._ThumbnailStoreDisp.___resetDefaults(_ThumbnailStoreDisp.java:86
>1)
>at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:999)
>at IceInternal.Incoming.invoke(Incoming.java:221)
>at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
>at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
>at Ice.ConnectionI.message(ConnectionI.java:1056)
>at IceInternal.ThreadPool.run(ThreadPool.java:395)
>at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
>at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
>at java.lang.Thread.run(Thread.java:748)
>
> serverExceptionClass = ome.conditions.ApiUsageException
> message = Unable to reset rendering settings in a read-only group for
>Pixels set id:4341
>}
>
>
>The error started to appear after a chown and chgrp command on a given
>project.
>
>would regenerating the thumbnails help?
>
>Best regards,
>
>Felix
>
>
>
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