[ome-users] OMERO.web login problem
Jens Eriksson
jenseri at gmail.com
Thu Nov 1 08:11:04 GMT 2018
Ok, I have uploaded the logs with the ID 27054.
Best,
Jens
On Wed, Oct 31, 2018 at 5:40 PM Simon Li <spli at dundee.ac.uk> wrote:
> Nothing stands out, so if you could upload your logs when you get a chance
> that'd be great.
>
> Simon
>
> On Wed, 31 Oct 2018 at 15:54, Jens Eriksson <jenseri at gmail.com> wrote:
>
>> Thank you so much for helping me with this, it's really driving me insane.
>>
>> Here is the OMERO.server config, and the outputs from master.err
>> (master.out is empty) and the errors from Blitz-0.log.
>>
>> I'll upload the logs tomorrow, unless there is a way of doing it without
>> Adobe Flash.
>>
>> There is not really anything that I can see in the provided logs.
>>
>> /J
>>
>> omero at frankencloud:~$ OMERO.server/bin/omero config get
>> omero.data.dir=/tank/OMERO
>> omero.db.name=omero_database
>> omero.db.pass=********
>> omero.db.poolsize=100
>> omero.db.user=db_user_omero
>> omero.jvmcfg.strategy=percent
>>
>> omero at frankencloud:~$ cat OMERO.server/var/log/Blitz-0.log | grep ERR
>> 2018-10-24 11:43:01,916 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-3) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 36057
>> 2018-10-24 16:01:31,808 ERROR [ ome.system.UpgradeCheck]
>> ( main) Unknown host:http://upgrade.openmicroscopy.org.uk
>> 2018-10-24 16:40:54,209 ERROR [ ome.system.UpgradeCheck]
>> ( main) Unknown host:http://upgrade.openmicroscopy.org.uk
>> 2018-10-25 15:40:25,904 ERROR [ omero.cmd.SessionI]
>> (.Server-10) Error destroying servant:
>> 1a99b5bf-f9d8-49fc-b64c-f48bfef6930comero.grid.SharedResources=ome.services.blitz.impl.SharedResourcesI at a2251c0
>> 2018-10-26 10:44:55,353 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-2) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 29972
>> 2018-10-26 10:45:37,456 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-5) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 30405
>> 2018-10-26 10:46:19,106 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-1) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 30323
>> 2018-10-26 10:47:00,522 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-2) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 30454
>> 2018-10-26 10:47:41,754 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-3) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 30188
>> 2018-10-26 10:48:23,176 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-3) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 30187
>> 2018-10-26 10:49:05,574 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-1) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 30790
>> 2018-10-26 10:49:48,024 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-5) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 30401
>> 2018-10-26 10:50:30,780 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-2) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 30325
>> 2018-10-26 10:51:14,736 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-3) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 30535
>> 2018-10-26 10:51:58,106 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-1) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 30173
>> 2018-10-26 10:52:40,967 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-2) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 28965
>> 2018-10-26 10:53:44,175 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-1) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 26933
>> 2018-10-26 11:01:38,832 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-4) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 22511
>> 2018-10-26 11:03:41,881 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-1) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 57472
>> 2018-10-26 11:04:05,646 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-4) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 25427
>> 2018-10-26 11:04:53,223 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-2) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 265678
>> 2018-10-26 11:06:47,713 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-2) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 37714
>> 2018-10-26 11:09:20,021 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-2) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 47526
>> 2018-10-26 11:10:46,356 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-1) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 47507
>> 2018-10-26 11:12:28,272 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-2) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 47517
>> 2018-10-26 11:13:48,282 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-5) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 47357
>> 2018-10-26 11:15:08,084 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-2) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 46742
>> 2018-10-26 11:16:14,128 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-3) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 46333
>> 2018-10-26 11:17:48,865 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-3) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 44539
>> 2018-10-26 11:37:45,653 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-1) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 25861
>> 2018-10-26 11:38:16,401 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-4) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 34381
>> 2018-10-26 11:38:24,530 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-2) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 25862
>> 2018-10-26 11:38:47,376 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-4) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 20177
>> 2018-10-26 11:46:53,337 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-5) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 688988
>> 2018-10-26 16:47:41,011 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-1) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 32420
>> 2018-10-26 16:48:48,937 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-5) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 34025
>> 2018-10-26 16:51:00,665 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-4) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 34483
>> 2018-10-29 10:40:21,317 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-5) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 312551
>> 2018-10-29 10:44:15,660 ERROR [ ome.services.util.ServiceHandler]
>> (2-thread-4) Method interface ome.services.util.Executor$Work.doWork
>> invocation took 21411
>> 2018-10-29 16:07:36,367 INFO [ o.c.a.ResetPasswordRequestI. at 59bb2d91]
>> (2-thread-4) notify cancelled: omero.cmd.ERR at 72073a15
>> /omero.cmd.Status at 64113dc3
>> 2018-10-29 16:07:36,380 INFO [ o.c.a.ResetPasswordRequestI. at 59bb2d91]
>> (.Server-39) notify cancelled: omero.cmd.ERR at 72073a15
>> /omero.cmd.Status at 64113dc3
>>
>> omero at frankencloud:~$ cat OMERO.server/var/log/master.err
>>
>> Oct 22, 2018 6:47:27 PM java.util.prefs.FileSystemPreferences$1 run
>> INFO: Created user preferences directory.
>> -! 10/23/18 11:45:19.424 icegridnode: warning: exception occurred while
>> deactivating `OMERO.Glacier2' using process proxy:
>> Network.cpp:2357: Ice::ConnectionRefusedException:
>> connection refused: Connection refused
>> -! 10/23/18 11:45:19.425 icegridnode: warning: exception occurred while
>> deactivating `OMERO.IceStorm' using process proxy:
>> Network.cpp:2357: Ice::ConnectionRefusedException:
>> connection refused: Connection refused
>> !! 10/23/18 11:45:19.608 error: communicator not destroyed during global
>> destruction.!! 10/23/18 13:20:11.369 error: communicator not destroyed
>> during global destruction.-! 10/24/18 11:40:53.911 icegridnode: warning:
>> exception occurred while deactivating `OMERO.Glacier2' using process proxy:
>> Network.cpp:2357: Ice::ConnectionRefusedException:
>> connection refused: Connection refused
>> -! 10/24/18 11:40:53.911 icegridnode: warning: exception occurred while
>> deactivating `OMERO.IceStorm' using process proxy:
>> Network.cpp:2357: Ice::ConnectionRefusedException:
>> connection refused: Connection refused
>> !! 10/24/18 11:40:54.294 error: communicator not destroyed during global
>> destruction.-! 10/24/18 15:54:38.959 icegridnode: warning: exception
>> occurred while deactivating `OMERO.IceStorm' using process proxy:
>> Network.cpp:2357: Ice::ConnectionRefusedException:
>> connection refused: Connection refused
>> -! 10/24/18 15:54:38.960 icegridnode: warning: exception occurred while
>> deactivating `OMERO.Glacier2' using process proxy:
>> Network.cpp:2357: Ice::ConnectionRefusedException:
>> connection refused: Connection refused
>> -! 10/24/18 15:54:38:971 warning: Blitz-0-Ice.ThreadPool.Server-41:
>> dispatch exception:
>> identity:
>> session-9795340b-fa8b-4d9a-af63-f0f2cd57ba01/1823dd68-afb4-450d-bfcf-c5fda7c9c06c
>> facet:
>> operation: destroy
>> remote host: 130.238.46.98 remote port: 34148
>> Ice.ObjectAdapterDeactivatedException
>> name = "BlitzAdapter"
>> at
>> Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
>> at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
>> at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
>> at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:454)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:384)
>> at omero.cmd.SessionI.doDestroy(SessionI.java:374)
>> at omero.cmd.SessionI.destroy(SessionI.java:302)
>> at
>> omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
>> at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
>> at
>> omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
>> at IceInternal.Incoming.invoke(Incoming.java:221)
>> at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
>> at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
>> at Ice.ConnectionI.message(ConnectionI.java:1056)
>> at IceInternal.ThreadPool.run(ThreadPool.java:395)
>> at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
>> at
>> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
>> at java.lang.Thread.run(Thread.java:748)
>>
>> -! 10/24/18 15:54:38:970 warning: Blitz-0-Ice.ThreadPool.Server-36:
>> dispatch exception:
>> identity:
>> session-9fc728a1-93c0-4fef-84c6-1e4ccaf1865d/4a1b1bef-86f7-4f36-a384-6fa003e62e39
>> facet:
>> operation: destroy
>> remote host: 130.238.46.98 remote port: 34150
>> Ice.ObjectAdapterDeactivatedException
>> name = "BlitzAdapter"
>> at
>> Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
>> at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
>> at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
>> at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:454)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:384)
>> at omero.cmd.SessionI.doDestroy(SessionI.java:374)
>> at omero.cmd.SessionI.destroy(SessionI.java:302)
>> at
>> omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
>> at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
>> at
>> omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
>> at IceInternal.Incoming.invoke(Incoming.java:221)
>> at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
>> at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
>> at Ice.ConnectionI.message(ConnectionI.java:1056)
>> at IceInternal.ThreadPool.run(ThreadPool.java:395)
>> at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
>> at
>> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
>> at java.lang.Thread.run(Thread.java:748)
>>
>> !! 10/24/18 15:54:39.050 error: communicator not destroyed during global
>> destruction.-! 10/24/18 16:01:24.760 icegridnode: warning: failed to join
>> the multicast group for IceGrid discovery:
>> endpoints = udp -h "239.255.0.1" -p 4061
>> Network.cpp:1859: Ice::SocketException:
>> socket exception: No such device
>> -! 10/24/18 16:09:16.352 icegridnode: warning: exception occurred while
>> deactivating `OMERO.IceStorm' using process proxy:
>> Network.cpp:2357: Ice::ConnectionRefusedException:
>> connection refused: Connection refused
>> -! 10/24/18 16:09:16.353 icegridnode: warning: exception occurred while
>> deactivating `OMERO.Glacier2' using process proxy:
>> Network.cpp:2357: Ice::ConnectionRefusedException:
>> connection refused: Connection refused
>> -! 10/24/18 16:09:16:397 warning: Blitz-0-Ice.ThreadPool.Server-8:
>> dispatch exception:
>> identity:
>> session-6b461b4d-4328-4682-8b33-09350af07a5d/4792b70e-7198-41ea-bb6d-0a118d4e6f64
>> facet:
>> operation: destroy
>> remote host: 127.0.0.1 remote port: 41696
>> Ice.ObjectAdapterDeactivatedException
>> name = "BlitzAdapter"
>> at
>> Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
>> at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
>> at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
>> at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:454)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:384)
>> at omero.cmd.SessionI.doDestroy(SessionI.java:374)
>> at omero.cmd.SessionI.destroy(SessionI.java:302)
>> at
>> omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
>> at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
>> at
>> omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
>> at IceInternal.Incoming.invoke(Incoming.java:221)
>> at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
>> at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
>> at Ice.ConnectionI.message(ConnectionI.java:1056)
>> at IceInternal.ThreadPool.run(ThreadPool.java:395)
>> at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
>> at
>> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
>> at java.lang.Thread.run(Thread.java:748)
>>
>> -! 10/24/18 16:09:16:396 warning: Blitz-0-Ice.ThreadPool.Server-10:
>> dispatch exception:
>> identity:
>> session-d4b1b636-7952-47ed-8604-2eeec8d38b82/02ce8793-eb34-4745-952b-16e1b32e70cd
>> facet:
>> operation: destroy
>> remote host: 0:0:0:0:0:0:0:1 remote port: 37742
>> Ice.ObjectAdapterDeactivatedException
>> name = "BlitzAdapter"
>> at
>> Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
>> at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
>> at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
>> at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:454)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:384)
>> at omero.cmd.SessionI.doDestroy(SessionI.java:374)
>> at omero.cmd.SessionI.destroy(SessionI.java:302)
>> at
>> omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
>> at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
>> at
>> omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
>> at IceInternal.Incoming.invoke(Incoming.java:221)
>> at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
>> at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
>> at Ice.ConnectionI.message(ConnectionI.java:1056)
>> at IceInternal.ThreadPool.run(ThreadPool.java:395)
>> at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
>> at
>> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
>> at java.lang.Thread.run(Thread.java:748)
>>
>> !! 10/24/18 16:09:16.511 error: communicator not destroyed during global
>> destruction.-! 10/24/18 16:40:46.919 icegridnode: warning: failed to join
>> the multicast group for IceGrid discovery:
>> endpoints = udp -h "239.255.0.1" -p 4061
>> Network.cpp:1859: Ice::SocketException:
>> socket exception: No such device
>> !! 10/25/18 14:44:04.625 error: communicator not destroyed during global
>> destruction.-! 10/25/18 15:40:25:903 warning:
>> Blitz-0-Ice.ThreadPool.Server-4: dispatch exception:
>> identity:
>> session-701ec8c3-0e53-4164-90fb-224e952b1bb6/6068e95d-a9e5-4ac8-8acd-66b34030e0d4
>> facet:
>> operation: destroy
>> remote host: 130.238.46.98 remote port: 37082
>> Ice.ObjectAdapterDeactivatedException
>> name = "BlitzAdapter"
>> at
>> Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
>> at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
>> at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
>> at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:454)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:384)
>> at omero.cmd.SessionI.doDestroy(SessionI.java:374)
>> at omero.cmd.SessionI.destroy(SessionI.java:302)
>> at
>> omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
>> at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
>> at
>> omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
>> at IceInternal.Incoming.invoke(Incoming.java:221)
>> at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
>> at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
>> at Ice.ConnectionI.message(ConnectionI.java:1056)
>> at IceInternal.ThreadPool.run(ThreadPool.java:395)
>> at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
>> at
>> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
>> at java.lang.Thread.run(Thread.java:748)
>>
>> -! 10/25/18 15:40:25:905 warning: Blitz-0-Ice.ThreadPool.Server-10:
>> dispatch exception:
>> identity:
>> session-1a99b5bf-f9d8-49fc-b64c-f48bfef6930c/2d172bfb-ebda-47f3-8e69-139e28b69564
>> facet:
>> operation: destroy
>> remote host: 130.238.46.98 remote port: 37084
>> Ice.ObjectAdapterDeactivatedException
>> name = "BlitzAdapter"
>> at
>> Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
>> at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
>> at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
>> at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:454)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:384)
>> at omero.cmd.SessionI.doDestroy(SessionI.java:374)
>> at omero.cmd.SessionI.destroy(SessionI.java:302)
>> at
>> omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
>> at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
>> at
>> omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
>> at IceInternal.Incoming.invoke(Incoming.java:221)
>> at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
>> at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
>> at Ice.ConnectionI.message(ConnectionI.java:1056)
>> at IceInternal.ThreadPool.run(ThreadPool.java:395)
>> at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
>> at
>> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
>> at java.lang.Thread.run(Thread.java:748)
>>
>> !! 10/25/18 15:40:25.981 error: communicator not destroyed during global
>> destruction.!! 10/30/18 09:56:24.340 error: communicator not destroyed
>> during global destruction.!! 10/30/18 10:59:34.561 error: communicator not
>> destroyed during global destruction.-! 10/30/18 11:07:59:780 warning:
>> Blitz-0-Ice.ThreadPool.Server-10: dispatch exception:
>> identity:
>> session-01bbf860-5ddc-4333-8b4d-6dba4c6466f0/2f093ce1-aa0b-4328-bb39-9147391d40b5
>> facet:
>> operation: destroy
>> remote host: 130.238.46.98 remote port: 41308
>> Ice.ObjectAdapterDeactivatedException
>> name = "BlitzAdapter"
>> at
>> Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
>> at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
>> at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
>> at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:454)
>> at omero.cmd.SessionI.cleanServants(SessionI.java:384)
>> at omero.cmd.SessionI.doDestroy(SessionI.java:374)
>> at omero.cmd.SessionI.destroy(SessionI.java:302)
>> at
>> omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
>> at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
>> at
>> omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
>> at IceInternal.Incoming.invoke(Incoming.java:221)
>> at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
>> at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
>> at Ice.ConnectionI.message(ConnectionI.java:1056)
>> at IceInternal.ThreadPool.run(ThreadPool.java:395)
>> at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
>> at
>> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
>> at java.lang.Thread.run(Thread.java:748)
>>
>> !! 10/30/18 11:07:59.840 error: communicator not destroyed during global
>> destruction.
>>
>>
>>
>> On Wed, Oct 31, 2018 at 4:14 PM Simon Li <spli at dundee.ac.uk> wrote:
>>
>>> I can't see any obvious problems. The two entries in your Nginx
>>> error.log are fine, OMERO.web let's you fetch files from the statics
>>> directory but doesn't let you list them, and the missing favicon is fine.
>>>
>>> Could you post your OMERO.server config, and check your OMERO.server
>>> logs for errors, in particular master.* and Blitz-0.log? If you can't see
>>> anything useful could you upload all your logs (OMERO.server and OMERO.web)
>>> to https://www.openmicroscopy.org/qa2/ ?
>>>
>>> Best wishes, Simon
>>>
>>>
>>>
>>> On Tue, 30 Oct 2018 at 14:51, Jens Eriksson <jenseri at gmail.com> wrote:
>>>
>>>> Nothing odd pops out in the nginx access.log.
>>>>
>>>> In the Nginx error.log there are two entries that may be intreresting:
>>>> 2018/10/30 10:56:40 [error] 93526#93526: *80 directory index of
>>>> "/home/omero/OMERO.py/lib/python/omeroweb/static/" is forbidden, client:
>>>> 130.238.46.201, server: localhost, request: "GET /omero/static/ HTTP/1.1",
>>>> host: "frankencloud.imbim.uu.se"
>>>> 2018/10/30 13:59:31 [error] 93528#93528: *111 open()
>>>> "/usr/share/nginx/html/favicon.ico" failed (2: No such file or directory),
>>>> client: 130.238.46.81, server: localhost, request: "GET /favicon.ico
>>>> HTTP/1.1", host: "frankencloud.imbim.uu.se"
>>>>
>>>> frankencloud.imbim.uu.se is the server on out local network.
>>>>
>>>> Restarting OMERO.web with omero.web.debug set True and reading through
>>>> the OMEROweb.log does not give any new insights. I appended it to the end
>>>> of the email, in case you see something I don't.
>>>>
>>>> Logging in via OMERO.py/bin/omero login seems to work fine:
>>>>
>>>> (omerowebvenv) omero at frankencloud:~$ OMERO.py/bin/omero login
>>>> Server: [localhost:4064]
>>>> Username: [omero]root
>>>> Password:
>>>> Created session for root at localhost:4064. Idle timeout: 10 min. Current
>>>> group: system
>>>>
>>>>
>>>>
>>>> omero at frankencloud:~$ cat OMERO.py/var/log/OMEROweb.log
>>>> 2018-10-30 14:22:30,320 INFO [
>>>> __main__] (MainThread) Application Starting...
>>>> 2018-10-30 14:22:30,325 INFO [
>>>> root] (MainThread) Processing custom settings for module omeroweb.settings
>>>> 2018-10-30 14:22:30,325 INFO [
>>>> root] (MainThread) Processing custom settings for module omeroweb.settings
>>>> 2018-10-30 14:22:30,326 INFO [
>>>> root] (MainThread) Processing custom settings for module omeroweb.settings
>>>> 2018-10-30 14:22:30,326 DEBUG [
>>>> omeroweb.settings] (MainThread) ADMINS = [] (source:default)
>>>> 2018-10-30 14:22:30,326 DEBUG [
>>>> omeroweb.settings] (MainThread) APPLICATION_SERVER = 'wsgi-tcp'
>>>> (source:omero.web.application_server)
>>>> 2018-10-30 14:22:30,326 DEBUG [
>>>> omeroweb.settings] (MainThread) APPLICATION_SERVER_HOST = '127.0.0.1'
>>>> (source:default)
>>>> 2018-10-30 14:22:30,326 DEBUG [
>>>> omeroweb.settings] (MainThread) APPLICATION_SERVER_MAX_REQUESTS = 500
>>>> (source:omero.web.application_server.max_requests)
>>>> 2018-10-30 14:22:30,326 DEBUG [
>>>> omeroweb.settings] (MainThread) APPLICATION_SERVER_PORT = 4080
>>>> (source:default)
>>>> 2018-10-30 14:22:30,326 DEBUG [
>>>> omeroweb.settings] (MainThread) ADDITIONAL_APPS = [u'omero_figure',
>>>> u'omero_iviewer'] (source:omero.web.apps)
>>>> 2018-10-30 14:22:30,326 DEBUG [
>>>> omeroweb.settings] (MainThread) BASE_INCLUDE_TEMPLATE = None
>>>> (source:default)
>>>> 2018-10-30 14:22:30,326 DEBUG [
>>>> omeroweb.settings] (MainThread) CACHES = {u'default': {u'BACKEND':
>>>> u'django.core.cache.backends.dummy.DummyCache'}} (source:default)
>>>> 2018-10-30 14:22:30,326 DEBUG [
>>>> omeroweb.settings] (MainThread) CHUNK_SIZE = 1048576 (source:default)
>>>> 2018-10-30 14:22:30,326 DEBUG [
>>>> omeroweb.settings] (MainThread) CORS_ORIGIN_ALLOW_ALL = False
>>>> (source:default)
>>>> 2018-10-30 14:22:30,326 DEBUG [
>>>> omeroweb.settings] (MainThread) CORS_ORIGIN_WHITELIST = [] (source:default)
>>>> 2018-10-30 14:22:30,327 DEBUG [
>>>> omeroweb.settings] (MainThread) DATABASES = {} (source:default)
>>>> 2018-10-30 14:22:30,327 DEBUG [
>>>> omeroweb.settings] (MainThread) DEBUG = True (source:omero.web.debug)
>>>> 2018-10-30 14:22:30,327 DEBUG [
>>>> omeroweb.settings] (MainThread) INDEX_TEMPLATE = None (source:default)
>>>> 2018-10-30 14:22:30,327 DEBUG [
>>>> omeroweb.settings] (MainThread) LOGDIR = '/home/omero/OMERO.py/var/log'
>>>> (source:default)
>>>> 2018-10-30 14:22:30,327 DEBUG [
>>>> omeroweb.settings] (MainThread) LOGIN_LOGO = None (source:default)
>>>> 2018-10-30 14:22:30,327 DEBUG [
>>>> omeroweb.settings] (MainThread) LOGIN_REDIRECT = {} (source:default)
>>>> 2018-10-30 14:22:30,327 DEBUG [
>>>> omeroweb.settings] (MainThread) LOGIN_VIEW = 'weblogin' (source:default)
>>>> 2018-10-30 14:22:30,327 DEBUG [
>>>> omeroweb.settings] (MainThread) MIDDLEWARE_CLASSES_LIST = [{u'index': 1,
>>>> u'class': u'django.middleware.common.BrokenLinkEmailsMiddleware'},
>>>> {u'index': 2, u'class': u'django.middleware.common.CommonMiddleware'},
>>>> {u'index': 3, u'class':
>>>> u'django.contrib.sessions.middleware.SessionMiddleware'}, {u'index': 4,
>>>> u'class': u'django.middleware.csrf.CsrfViewMiddleware'}, {u'index': 5,
>>>> u'class': u'django.contrib.messages.middleware.MessageMiddleware'},
>>>> {u'index': 0, u'class': u'whitenoise.middleware.WhiteNoiseMiddleware'}]
>>>> (source:omero.web.middleware)
>>>> 2018-10-30 14:22:30,327 DEBUG [
>>>> omeroweb.settings] (MainThread) OPEN_WITH = [[u'Image viewer',
>>>> u'webgateway', {u'supported_objects': [u'image'], u'script_url':
>>>> u'webclient/javascript/ome.openwith_viewer.js'}], [u'omero_figure',
>>>> u'new_figure', {u'supported_objects': [u'images'], u'target': u'_blank',
>>>> u'label': u'OMERO.figure'}]] (source:omero.web.open_with)
>>>> 2018-10-30 14:22:30,327 DEBUG [
>>>> omeroweb.settings] (MainThread) PAGE = 200 (source:default)
>>>> 2018-10-30 14:22:30,327 DEBUG [
>>>> omeroweb.settings] (MainThread) PING_INTERVAL = 60000 (source:default)
>>>> 2018-10-30 14:22:30,327 DEBUG [
>>>> omeroweb.settings] (MainThread) PIPELINE_CSS_COMPRESSOR = None
>>>> (source:default)
>>>> 2018-10-30 14:22:30,327 DEBUG [
>>>> omeroweb.settings] (MainThread) PIPELINE_JS_COMPRESSOR = None
>>>> (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) STATICFILES_STORAGE =
>>>> 'pipeline.storage.PipelineStorage' (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) FORCE_SCRIPT_NAME = '/omero'
>>>> (source:omero.web.prefix)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_CACHE_ENABLED = False
>>>> (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_CACHE_KEY = u'********************'
>>>> (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_CACHE_TIMEOUT = 86400
>>>> (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_ENABLED = False (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_GET_ONLY = True (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_PASSWORD = u'********************'
>>>> (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_SERVER_ID = 1 (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_URL_FILTER = <_sre.SRE_Pattern
>>>> object at 0x7f9b4c618660> (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_USER = None (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) SECRET_KEY = u'********************'
>>>> (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) SECURE = False (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) SECURE_PROXY_SSL_HEADER = []
>>>> (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) SERVER_LIST = [[u'localhost', 4064,
>>>> u'omero']] (source:default)
>>>> 2018-10-30 14:22:30,328 DEBUG [
>>>> omeroweb.settings] (MainThread) SESSION_COOKIE_AGE = 86400 (source:default)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) SESSION_COOKIE_DOMAIN = None
>>>> (source:default)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) SESSION_COOKIE_NAME = None (source:default)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) SESSION_ENGINE =
>>>> 'django.contrib.sessions.backends.cache' (source:omero.web.session_engine)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) SESSION_EXPIRE_AT_BROWSER_CLOSE = True
>>>> (source:default)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) SHARING_OPENGRAPH = {} (source:default)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) SHARING_TWITTER = {} (source:default)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) STATIC_ROOT =
>>>> '/home/omero/OMERO.py/lib/python/omeroweb/static' (source:default)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) STATIC_URL = '/omero/static/'
>>>> (source:omero.web.static_url)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) STATICFILES_DIRS = [] (source:default)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) TEMPLATE_DIRS = [] (source:default)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) THUMBNAILS_BATCH = 50 (source:default)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) CENTER_PLUGINS = [] (source:default)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) METADATA_PANES = [{u'index': 1, u'name':
>>>> u'tag', u'label': u'Tags'}, {u'index': 2, u'name': u'map', u'label':
>>>> u'Key-Value Pairs'}, {u'index': 3, u'name': u'table', u'label': u'Tables'},
>>>> {u'index': 4, u'name': u'file', u'label': u'Attachments'}, {u'index': 5,
>>>> u'name': u'comment', u'label': u'Comments'}, {u'index': 6, u'name':
>>>> u'rating', u'label': u'Ratings'}, {u'index': 7, u'name': u'other',
>>>> u'label': u'Others'}] (source:default)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) RIGHT_PLUGINS = [[u'Acquisition',
>>>> u'webclient/data/includes/right_plugin.acquisition.js.html',
>>>> u'metadata_tab'], [u'Preview',
>>>> u'webclient/data/includes/right_plugin.preview.js.html', u'preview_tab']]
>>>> (source:default)
>>>> 2018-10-30 14:22:30,329 DEBUG [
>>>> omeroweb.settings] (MainThread) TOP_LINKS = [[u'Data', u'webindex',
>>>> {u'title': u'Browse Data via Projects, Tags etc'}], [u'History',
>>>> u'history', {u'title': u'History'}], [u'Help', u'
>>>> https://help.openmicroscopy.org/', {u'target': u'new', u'title':
>>>> u'Open OMERO user guide in a new tab'}], [u'Figure', u'figure_index',
>>>> {u'target': u'_blank', u'title': u'Open Figure in new tab'}]]
>>>> (source:omero.web.ui.top_links)
>>>> 2018-10-30 14:22:30,330 DEBUG [
>>>> omeroweb.settings] (MainThread) USE_X_FORWARDED_HOST = False
>>>> (source:default)
>>>> 2018-10-30 14:22:30,330 DEBUG [
>>>> omeroweb.settings] (MainThread) VIEWER_VIEW = 'omero_iviewer.views.index'
>>>> (source:omero.web.viewer.view)
>>>> 2018-10-30 14:22:30,330 DEBUG [
>>>> omeroweb.settings] (MainThread) WEBGATEWAY_CACHE = None (source:default)
>>>> 2018-10-30 14:22:30,330 DEBUG [
>>>> omeroweb.settings] (MainThread) WSGI_ARGS = None (source:default)
>>>> 2018-10-30 14:22:30,330 DEBUG [
>>>> omeroweb.settings] (MainThread) WSGI_TIMEOUT = 60 (source:default)
>>>> 2018-10-30 14:22:30,330 DEBUG [
>>>> omeroweb.settings] (MainThread) WSGI_WORKERS = 5 (source:default)
>>>> 2018-10-30 14:22:30,330 DEBUG [
>>>> omeroweb.settings] (MainThread) Attempting to import additional app
>>>> settings for app: omero_figure
>>>> 2018-10-30 14:22:30,330 INFO [
>>>> root] (MainThread) Processing custom settings for module
>>>> omero_figure.settings
>>>> 2018-10-30 14:22:30,330 DEBUG [
>>>> omeroweb.settings] (MainThread) Attempting to import additional app
>>>> settings for app: omero_iviewer
>>>> 2018-10-30 14:22:30,330 DEBUG [
>>>> omeroweb.settings] (MainThread) Couldn't import settings from app:
>>>> omero_iviewer
>>>> 2018-10-30 14:22:30,331 DEBUG [
>>>> omeroweb.settings] (MainThread)
>>>> INSTALLED_APPS=[('django.contrib.staticfiles', 'django.contrib.auth',
>>>> 'django.contrib.contenttypes', 'django.contrib.sessions',
>>>> 'django.contrib.sites', u'omero_figure', u'omero_iviewer',
>>>> 'omeroweb.feedback', 'omeroweb.webadmin', 'omeroweb.webclient',
>>>> 'omeroweb.webgateway', 'omeroweb.webredirect', 'omeroweb.api', 'pipeline')]
>>>> 2018-10-30 13:22:30,441 WARNI [
>>>> py.warnings] (proc.112125) <module>():9
>>>> /home/omero/omerowebvenv/local/lib/python2.7/site-packages/pipeline/utils.py:11:
>>>> RemovedInDjango19Warning: django.utils.importlib will be removed in Django
>>>> 1.9.
>>>> from django.utils import importlib
>>>>
>>>> 2018-10-30 14:22:31,299 INFO [
>>>> __main__] (MainThread) Application Starting...
>>>> 2018-10-30 14:22:31,303 INFO [
>>>> root] (MainThread) Processing custom settings for module omeroweb.settings
>>>> 2018-10-30 14:22:31,304 INFO [
>>>> root] (MainThread) Processing custom settings for module omeroweb.settings
>>>> 2018-10-30 14:22:31,304 INFO [
>>>> root] (MainThread) Processing custom settings for module omeroweb.settings
>>>> 2018-10-30 14:22:31,304 DEBUG [
>>>> omeroweb.settings] (MainThread) ADMINS = [] (source:default)
>>>> 2018-10-30 14:22:31,304 DEBUG [
>>>> omeroweb.settings] (MainThread) APPLICATION_SERVER = 'wsgi-tcp'
>>>> (source:omero.web.application_server)
>>>> 2018-10-30 14:22:31,304 DEBUG [
>>>> omeroweb.settings] (MainThread) APPLICATION_SERVER_HOST = '127.0.0.1'
>>>> (source:default)
>>>> 2018-10-30 14:22:31,304 DEBUG [
>>>> omeroweb.settings] (MainThread) APPLICATION_SERVER_MAX_REQUESTS = 500
>>>> (source:omero.web.application_server.max_requests)
>>>> 2018-10-30 14:22:31,304 DEBUG [
>>>> omeroweb.settings] (MainThread) APPLICATION_SERVER_PORT = 4080
>>>> (source:default)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) ADDITIONAL_APPS = [u'omero_figure',
>>>> u'omero_iviewer'] (source:omero.web.apps)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) BASE_INCLUDE_TEMPLATE = None
>>>> (source:default)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) CACHES = {u'default': {u'BACKEND':
>>>> u'django.core.cache.backends.dummy.DummyCache'}} (source:default)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) CHUNK_SIZE = 1048576 (source:default)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) CORS_ORIGIN_ALLOW_ALL = False
>>>> (source:default)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) CORS_ORIGIN_WHITELIST = [] (source:default)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) DATABASES = {} (source:default)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) DEBUG = True (source:omero.web.debug)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) INDEX_TEMPLATE = None (source:default)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) LOGDIR = '/home/omero/OMERO.py/var/log'
>>>> (source:default)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) LOGIN_LOGO = None (source:default)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) LOGIN_REDIRECT = {} (source:default)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) LOGIN_VIEW = 'weblogin' (source:default)
>>>> 2018-10-30 14:22:31,305 DEBUG [
>>>> omeroweb.settings] (MainThread) MIDDLEWARE_CLASSES_LIST = [{u'index': 1,
>>>> u'class': u'django.middleware.common.BrokenLinkEmailsMiddleware'},
>>>> {u'index': 2, u'class': u'django.middleware.common.CommonMiddleware'},
>>>> {u'index': 3, u'class':
>>>> u'django.contrib.sessions.middleware.SessionMiddleware'}, {u'index': 4,
>>>> u'class': u'django.middleware.csrf.CsrfViewMiddleware'}, {u'index': 5,
>>>> u'class': u'django.contrib.messages.middleware.MessageMiddleware'},
>>>> {u'index': 0, u'class': u'whitenoise.middleware.WhiteNoiseMiddleware'}]
>>>> (source:omero.web.middleware)
>>>> 2018-10-30 14:22:31,306 DEBUG [
>>>> omeroweb.settings] (MainThread) OPEN_WITH = [[u'Image viewer',
>>>> u'webgateway', {u'supported_objects': [u'image'], u'script_url':
>>>> u'webclient/javascript/ome.openwith_viewer.js'}], [u'omero_figure',
>>>> u'new_figure', {u'supported_objects': [u'images'], u'target': u'_blank',
>>>> u'label': u'OMERO.figure'}]] (source:omero.web.open_with)
>>>> 2018-10-30 14:22:31,306 DEBUG [
>>>> omeroweb.settings] (MainThread) PAGE = 200 (source:default)
>>>> 2018-10-30 14:22:31,306 DEBUG [
>>>> omeroweb.settings] (MainThread) PING_INTERVAL = 60000 (source:default)
>>>> 2018-10-30 14:22:31,306 DEBUG [
>>>> omeroweb.settings] (MainThread) PIPELINE_CSS_COMPRESSOR = None
>>>> (source:default)
>>>> 2018-10-30 14:22:31,306 DEBUG [
>>>> omeroweb.settings] (MainThread) PIPELINE_JS_COMPRESSOR = None
>>>> (source:default)
>>>> 2018-10-30 14:22:31,306 DEBUG [
>>>> omeroweb.settings] (MainThread) STATICFILES_STORAGE =
>>>> 'pipeline.storage.PipelineStorage' (source:default)
>>>> 2018-10-30 14:22:31,306 DEBUG [
>>>> omeroweb.settings] (MainThread) FORCE_SCRIPT_NAME = '/omero'
>>>> (source:omero.web.prefix)
>>>> 2018-10-30 14:22:31,306 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_CACHE_ENABLED = False
>>>> (source:default)
>>>> 2018-10-30 14:22:31,306 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_CACHE_KEY = u'********************'
>>>> (source:default)
>>>> 2018-10-30 14:22:31,306 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_CACHE_TIMEOUT = 86400
>>>> (source:default)
>>>> 2018-10-30 14:22:31,306 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_ENABLED = False (source:default)
>>>> 2018-10-30 14:22:31,306 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_GET_ONLY = True (source:default)
>>>> 2018-10-30 14:22:31,306 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_PASSWORD = u'********************'
>>>> (source:default)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_SERVER_ID = 1 (source:default)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_URL_FILTER = <_sre.SRE_Pattern
>>>> object at 0x7f0343621660> (source:default)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) PUBLIC_USER = None (source:default)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) SECRET_KEY = u'********************'
>>>> (source:default)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) SECURE = False (source:default)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) SECURE_PROXY_SSL_HEADER = []
>>>> (source:default)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) SERVER_LIST = [[u'localhost', 4064,
>>>> u'omero']] (source:default)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) SESSION_COOKIE_AGE = 86400 (source:default)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) SESSION_COOKIE_DOMAIN = None
>>>> (source:default)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) SESSION_COOKIE_NAME = None (source:default)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) SESSION_ENGINE =
>>>> 'django.contrib.sessions.backends.cache' (source:omero.web.session_engine)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) SESSION_EXPIRE_AT_BROWSER_CLOSE = True
>>>> (source:default)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) SHARING_OPENGRAPH = {} (source:default)
>>>> 2018-10-30 14:22:31,307 DEBUG [
>>>> omeroweb.settings] (MainThread) SHARING_TWITTER = {} (source:default)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) STATIC_ROOT =
>>>> '/home/omero/OMERO.py/lib/python/omeroweb/static' (source:default)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) STATIC_URL = '/omero/static/'
>>>> (source:omero.web.static_url)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) STATICFILES_DIRS = [] (source:default)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) TEMPLATE_DIRS = [] (source:default)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) THUMBNAILS_BATCH = 50 (source:default)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) CENTER_PLUGINS = [] (source:default)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) METADATA_PANES = [{u'index': 1, u'name':
>>>> u'tag', u'label': u'Tags'}, {u'index': 2, u'name': u'map', u'label':
>>>> u'Key-Value Pairs'}, {u'index': 3, u'name': u'table', u'label': u'Tables'},
>>>> {u'index': 4, u'name': u'file', u'label': u'Attachments'}, {u'index': 5,
>>>> u'name': u'comment', u'label': u'Comments'}, {u'index': 6, u'name':
>>>> u'rating', u'label': u'Ratings'}, {u'index': 7, u'name': u'other',
>>>> u'label': u'Others'}] (source:default)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) RIGHT_PLUGINS = [[u'Acquisition',
>>>> u'webclient/data/includes/right_plugin.acquisition.js.html',
>>>> u'metadata_tab'], [u'Preview',
>>>> u'webclient/data/includes/right_plugin.preview.js.html', u'preview_tab']]
>>>> (source:default)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) TOP_LINKS = [[u'Data', u'webindex',
>>>> {u'title': u'Browse Data via Projects, Tags etc'}], [u'History',
>>>> u'history', {u'title': u'History'}], [u'Help', u'
>>>> https://help.openmicroscopy.org/', {u'target': u'new', u'title':
>>>> u'Open OMERO user guide in a new tab'}], [u'Figure', u'figure_index',
>>>> {u'target': u'_blank', u'title': u'Open Figure in new tab'}]]
>>>> (source:omero.web.ui.top_links)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) USE_X_FORWARDED_HOST = False
>>>> (source:default)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) VIEWER_VIEW = 'omero_iviewer.views.index'
>>>> (source:omero.web.viewer.view)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) WEBGATEWAY_CACHE = None (source:default)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) WSGI_ARGS = None (source:default)
>>>> 2018-10-30 14:22:31,308 DEBUG [
>>>> omeroweb.settings] (MainThread) WSGI_TIMEOUT = 60 (source:default)
>>>> 2018-10-30 14:22:31,309 DEBUG [
>>>> omeroweb.settings] (MainThread) WSGI_WORKERS = 5 (source:default)
>>>> 2018-10-30 14:22:31,309 DEBUG [
>>>> omeroweb.settings] (MainThread) Attempting to import additional app
>>>> settings for app: omero_figure
>>>> 2018-10-30 14:22:31,309 INFO [
>>>> root] (MainThread) Processing custom settings for module
>>>> omero_figure.settings
>>>> 2018-10-30 14:22:31,309 DEBUG [
>>>> omeroweb.settings] (MainThread) Attempting to import additional app
>>>> settings for app: omero_iviewer
>>>> 2018-10-30 14:22:31,309 DEBUG [
>>>> omeroweb.settings] (MainThread) Couldn't import settings from app:
>>>> omero_iviewer
>>>> 2018-10-30 14:22:31,309 DEBUG [
>>>> omeroweb.settings] (MainThread)
>>>> INSTALLED_APPS=[('django.contrib.staticfiles', 'django.contrib.auth',
>>>> 'django.contrib.contenttypes', 'django.contrib.sessions',
>>>> 'django.contrib.sites', u'omero_figure', u'omero_iviewer',
>>>> 'omeroweb.feedback', 'omeroweb.webadmin', 'omeroweb.webclient',
>>>> 'omeroweb.webgateway', 'omeroweb.webredirect', 'omeroweb.api', 'pipeline')]
>>>>
>>>>
>>>> On Tue, Oct 30, 2018 at 1:05 PM Simon Li <spli at dundee.ac.uk> wrote:
>>>>
>>>>> Hi Jens
>>>>>
>>>>> Do you see anything relevant in your OMERO.web log
>>>>> (var/log/OMEROweb.log) and nginx logs (access.log, error.log) whilst
>>>>> logging in? If there's nothing could you temporarily enable debug logs (omero
>>>>> config set omero.web.debug True) and see if there's any more
>>>>> information in OMEROweb.log. If that doesn't help could you activate your
>>>>> web virtualenv in a terminal and attempt to connect to your server using
>>>>> bin/omero login?
>>>>>
>>>>> Simon
>>>>>
>>>>> On Tue, 30 Oct 2018 at 10:45, Jens Eriksson <jenseri at gmail.com> wrote:
>>>>>
>>>>>> Hello,
>>>>>>
>>>>>> I have recently installed OMERO.server 5.4.9 on an Ubuntu 16.04
>>>>>> system. The server works as intended with the default ports open.
>>>>>> OMERO-insight can be used to connect to and administer the server as normal.
>>>>>>
>>>>>> I have also installed OMERO.web separately from OMERO.server in a
>>>>>> virtualenv, as described here
>>>>>> <https://docs.openmicroscopy.org/omero/5.4.9/sysadmins/unix/install-web/walkthrough/omeroweb-install-ubuntu-ice3.6.html>.
>>>>>> I can connect to the OMERO.web login page (my.serverip/omero), but entering
>>>>>> a correct username and pass simply reloads the page. If the server is down,
>>>>>> then the OMERO.web login page displays the "cannot connect to
>>>>>> server"-message. Also, if I enter the wrong password and/or user then the
>>>>>> login page displays: "Error: Connection not available, please check
>>>>>> your user name and password."
>>>>>>
>>>>>> It seems like OMERO.web is in communication with the OMERO.server,
>>>>>> but that something is not configured correctly when going from the login in
>>>>>> to the rest of OMERO.web.
>>>>>>
>>>>>> OMERO.server/bin/omero admin diagnostics:
>>>>>>
>>>>>>
>>>>>> ================================================================================
>>>>>> OMERO Diagnostics (admin) 5.4.9-ice36-b101
>>>>>>
>>>>>> ================================================================================
>>>>>>
>>>>>> Commands: java -version 1.8.0 (/usr/bin/java)
>>>>>> Commands: python -V 2.7.12 (/usr/bin/python)
>>>>>> Commands: icegridnode --version 3.6.4
>>>>>> (/usr/bin/icegridnode)
>>>>>> Commands: icegridadmin --version 3.6.4
>>>>>> (/usr/bin/icegridadmin)
>>>>>> Commands: psql --version 9.6.10 (/usr/bin/psql)
>>>>>>
>>>>>> Server: icegridnode not started
>>>>>>
>>>>>> Log dir: /home/omero/OMERO.server/var/log exists
>>>>>> Log files: Blitz-0.log 217.0 MB errors=39
>>>>>> warnings=3111
>>>>>> Log files: DropBox.log 25.0 KB errors=0
>>>>>> warnings=10
>>>>>> Log files: FileServer.log 3.0 KB
>>>>>> Log files: Indexer-0.log 365.0 KB
>>>>>> Log files: MonitorServer.log 13.0 KB
>>>>>> Log files: OMEROweb.lock 0.0 KB
>>>>>> Log files: OMEROweb.log 0.0 KB errors=0
>>>>>> warnings=1
>>>>>> Log files: PixelData-0.log 301.0 KB errors=42
>>>>>> warnings=4
>>>>>> Log files: Processor-0.log 1.0 MB errors=0
>>>>>> warnings=5
>>>>>> Log files: Tables-0.log 17.0 KB errors=0
>>>>>> warnings=6
>>>>>> Log files: TestDropBox.log n/a
>>>>>> Log files: master.err 13.0 KB errors=7
>>>>>> warnings=11
>>>>>> Log files: master.out 0.0 KB
>>>>>> Log files: Total size 218.93 MB
>>>>>>
>>>>>>
>>>>>> Environment:OMERO_HOME=(unset)
>>>>>> Environment:OMERO_NODE=(unset)
>>>>>> Environment:OMERO_MASTER=(unset)
>>>>>> Environment:OMERO_USERDIR=(unset)
>>>>>> Environment:OMERO_TMPDIR=(unset)
>>>>>>
>>>>>> Environment:PATH=/home/omero/bin:/home/omero/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
>>>>>> Environment:PYTHONPATH=(unset)
>>>>>> Environment:ICE_HOME=(unset)
>>>>>> Environment:LD_LIBRARY_PATH=(unset)
>>>>>> Environment:DYLD_LIBRARY_PATH=(unset)
>>>>>>
>>>>>> Cannot list deployed applications.
>>>>>> OMERO data dir:'/tank/OMERO' Exists? True Is
>>>>>> writable? True
>>>>>> OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is
>>>>>> writable? True (Size: 0)
>>>>>>
>>>>>> JVM settings: Blitz-${index} -Xmx7200m
>>>>>> -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
>>>>>> JVM settings: Indexer-${index} -Xmx4800m
>>>>>> -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
>>>>>> JVM settings: PixelData-${index} -Xmx7200m
>>>>>> -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
>>>>>> JVM settings: Repository-${index} -Xmx4800m
>>>>>> -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
>>>>>>
>>>>>> OMERO.py/bin/omero config get:
>>>>>>
>>>>>> omero.web.application_server=wsgi-tcp
>>>>>> omero.web.application_server.max_requests=500
>>>>>> omero.web.apps=["omero_figure", "omero_iviewer"]
>>>>>> omero.web.debug=False
>>>>>> omero.web.middleware=[{"index": 1, "class":
>>>>>> "django.middleware.common.BrokenLinkEmailsMiddleware"}, {"index": 2,
>>>>>> "class": "django.middleware.common.CommonMiddleware"}, {"index": 3,
>>>>>> "class": "django.contrib.sessions.middleware.SessionMiddleware"}, {"index":
>>>>>> 4, "class": "django.middleware.csrf.CsrfViewMiddleware"}, {"index": 5,
>>>>>> "class": "django.contrib.messages.middleware.MessageMiddleware"}, {"index":
>>>>>> 0, "class": "whitenoise.middleware.WhiteNoiseMiddleware"}]
>>>>>> omero.web.open_with=[["Image viewer", "webgateway",
>>>>>> {"supported_objects": ["image"], "script_url":
>>>>>> "webclient/javascript/ome.openwith_viewer.js"}], ["omero_figure",
>>>>>> "new_figure", {"supported_objects": ["images"], "target": "_blank",
>>>>>> "label": "OMERO.figure"}]]
>>>>>> omero.web.prefix=/omero
>>>>>> omero.web.session_engine=django.contrib.sessions.backends.cache
>>>>>> omero.web.static_url=/omero/static/
>>>>>> omero.web.ui.top_links=[["Data", "webindex", {"title": "Browse Data
>>>>>> via Projects, Tags etc"}], ["History", "history", {"title": "History"}],
>>>>>> ["Help", "https://help.openmicroscopy.org/", {"target": "new",
>>>>>> "title": "Open OMERO user guide in a new tab"}], ["Figure", "figure_index",
>>>>>> {"target": "_blank", "title": "Open Figure in new tab"}]]
>>>>>> omero.web.viewer.view=omero_iviewer.views.index
>>>>>>
>>>>>>
>>>>>> Thank you and have a nice day!
>>>>>>
>>>>>> Jens Eriksson
>>>>>> Sellin Imaging Plattform
>>>>>> Uppsala University
>>>>>>
>>>>>> _______________________________________________
>>>>>> ome-users mailing list
>>>>>> ome-users at lists.openmicroscopy.org.uk
>>>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>>>>
>>>>>
>>>>> The University of Dundee is a registered Scottish Charity, No: SC015096
>>>>> _______________________________________________
>>>>> ome-users mailing list
>>>>> ome-users at lists.openmicroscopy.org.uk
>>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>>>
>>>> _______________________________________________
>>>> ome-users mailing list
>>>> ome-users at lists.openmicroscopy.org.uk
>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>>
>>>
>>> The University of Dundee is a registered Scottish Charity, No: SC015096
>>> _______________________________________________
>>> ome-users mailing list
>>> ome-users at lists.openmicroscopy.org.uk
>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>
>> _______________________________________________
>> ome-users mailing list
>> ome-users at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
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