[ome-users] bfopen error

[Kouichi C. Nakamura]

To whom it may concern,

|bfopen.m| does not work and issues an error as below:

| >> data = bfopen('Z:\xxxxx\xxxxx\Image000.png') Warning: Invalid file 
or directory 'D:\Fiji.app\scripts\..\plugins\loci_tools.jar'. > In 
javaclasspath>local_validate_dynamic_path (line 271) In 
javaclasspath>local_javapath (line 187) In javaclasspath (line 124) In 
javaaddpath (line 71) In bfopen (line 103) APNGReader initializing 
Z:\Analysis\Images from Otto\Image000.png Reading series #1 ...Undefined 
function or variable 'getMetadata'. Error in bfopen (line 268) 
metadataList = r.getMetadata(); 268 metadataList = r.getMetadata(); |

Output of |methods(loci.formats.ChannelSeparator)| or |methods(r)| does 
not contain |getMetadata| method. I suspect that the method has been 
recently renamed.

environments:

MATLAB Version: 9.4.0.813654 (R2018a)

Java 1.8.0_144-b01 with Oracle Corporation Java HotSpot(TM) 64-Bit 
Server VM mixed mode

Bio-formats MATLAB toolbox 5.8.1 (2018 March 22)

Best regards,

Kouichi

​

-- 
Kouichi C. Nakamura, PhD
Senior Postdoctoral Neuroscientist
MRC Brain Network Dynamics Unit
University of Oxford
Mansfield Road, Oxford OX1 3TH, United Kingdom
+44-1865-271582 (office)
http://www.mrcbndu.ox.ac.uk/people/dr-kouichi-c-nakamura
kouichi.c.nakamura at gmail.com
kouichi.nakamura at pharm.ox.ac.uk

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