[ome-users] Bug Report

[David Gault (Staff)]

Hi Trevor,

Any custom attributes such as the DICOM tags will be stored on the image info property. You will have to parse the values from the String of tags:
String info = img.getInfoProperty();

This will include the values for those two particular tags:
0018,0050 Slice Thickness #1 = 6.231669
0018,0070 Counts Accumulated #1 = 0
0018,0071 Acquisition Termination Condition #1 = TIME
0018,0088 Spacing Between Slices #1 = 6.231669

With Thanks,
David Gault

On 23 Jun 2018, at 21:59, Trevor Shelby <trvrshelby at gmail.com<mailto:trvrshelby at gmail.com>> wrote:

I hope this is the right place to send a bug report. I'm not really sure.

I am using BioFormats version 5.8.2 on a Linux with Java version 1.8.0. I am trying to open DICOM files and read information from their tags, but it looks like I'm getting back the wrong stuff when I'm using BioFormats (see Data Readout.png attachment). The units are converted, which is okay, but the thickness and spacing aren't being retrieved. I've attached some of the DICOM files that gave me mismatched results (I used the NM-MONO file in the screenshot) as well as the Java program I used for comparison. The problem could just be in my code, so sorry if it happens that I've just made some obvious oversight. Anyways, thanks for reading! Email back if you need more info.
<Data Readout.png><NM-MONO2-16-13x-heart.dcm><CT-MONO2-16-brain.dcm><MR-MONO2-12-an2.dcm><InfoTest.java>_______________________________________________
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