[ome-users] .vsi file conversion to .tiff getting exception error

[Mousumi Roy]

Hello David,

I have uploaded the .vsi and supporting files in the link. Kindly let me
know if it is accessible properly. Also, I have a request to not to share
this image with others.

Thank you,
Mousumi.



On Wed, Jun 20, 2018 at 10:04 AM David Gault (Staff) <d.gault at dundee.ac.uk>
wrote:

> Hi Mousumi,
>
> Thank you for reporting the issue, this is not a bug which we are aware of
> with VSI, as such it would be good to have a file that reproduces the
> problem for testing and debugging. If you have a sample file which you can
> provide for testing you can upload it to
> https://www.openmicroscopy.org/qa2/qa/upload/
>
> With Thanks,
> David Gault
>
> On 19 Jun 2018, at 17:09, Mousumi Roy <mousumi.roy at stonybrook.edu> wrote:
>
>
> Hello,
>
> I am using bftools and trying to convert .vsi images into .tiff using  *
> bfconvert* command line tool
> <https://docs.openmicroscopy.org/bio-formats/5.7.1/users/comlinetools/index.html>.
> But I am getting following error:
>
>
>
>
>
>
>
> *Exception in thread "main" loci.formats.FormatException: Plane index:1
> must be < 1 at loci.formats.FormatWriter.checkParams(FormatWriter.java:387)
> at loci.formats.out.TiffWriter.saveBytes(TiffWriter.java:215) at
> loci.formats.tools.ImageConverter.convertTilePlane(ImageConverter.java:748)
> at loci.formats.tools.ImageConverter.convertPlane(ImageConverter.java:634)
> at loci.formats.tools.ImageConverter.testConvert(ImageConverter.java:563)
> at loci.formats.tools.ImageConverter.main(ImageConverter.java:884) *
>
> I have 40x .vsi files which I need to convert into .tiff format but it
> seems I am not able to convert without compression. Kindly assist me.
>
> Thank you. Looking forward to your response.
>
> Sincerely,
> Mousumi Roy
> *Graduate Research assistant*
> Computer Science
> Stony Brook University
> m: 6316275860 <(631)%20627-5860>
> a: 100 Nicolls Rd, Stony Brook, NY 11794
> <https://maps.google.com/?q=100+Nicolls+Rd,+Stony+Brook,+NY+11794&entry=gmail&source=g>
> e: mousumi.roy at stonybrook.edu
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>
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