[ome-users] screwed channels and z-planes with lif files

[Melissa Linkert]

Hi Pascal,

Thank you for uploading a dataset.  I can duplicate the problem, and
we are currently investigating a fix as noted here:

https://trello.com/c/Zp2rgbqf/48-leica-lif-dimension-problems

Regards,
-Melissa

On Thu, Jun 14, 2018 at 10:15 AM, Pascal Lorentz
<Lorentz.Pascal at gmail.com> wrote:
> Dear Melissa
>
> Thanks a lot. I just uploaded the data set.
> In the folder you will find a lif and a lifext file. Leica told me that the
> lifext file is created with large data sets and contains the information for
> the pyramid structure for faster data handling in the Leica software. The
> lif file alone should be enough to be opened with FIJI. However I have the
> impression that the lif file is different if it comes along with a lifext
> file. Normally we don't have problems opening lif files with the bio format
> importer.
>
> Best regards
>
> Pascal
>
>
> Am 14.06.2018 um 17:00 schrieb Melissa Linkert:
>>
>> Hi Pascal,
>>
>> Thank you for reporting this problem, and for offering to send data.
>> Since the file is >= 2GB, it will need to be sent to the OME team via
>> FTP.  You should receive a private email with FTP credentials shortly.
>>
>> Regards,
>> -Melissa
>>
>> On Thu, Jun 14, 2018 at 9:43 AM, Pascal Lorentz
>> <Lorentz.Pascal at gmail.com> wrote:
>>>
>>> Dear OME team
>>>
>>> We came across some problems opening lif files with the bioformat
>>> importer
>>> with the latest FIJI Version.
>>> It seems that the channels and z-planes get screwed somehow.
>>> I acquired a smaller 2GB data set containing 2 channesl, 23 z-planes und
>>> 5
>>> time points. If you can provide me with an upload link I can upload the
>>> data
>>> set.
>>>
>>> Best regards
>>>
>>> Pascal
>>> _______________________________________________
>>> ome-users mailing list
>>> ome-users at lists.openmicroscopy.org.uk
>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>
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>