[ome-users] Bioformats 5.9.0 reads ND2 files along the wrong dimensions (series vs. timepoints)

Melissa Linkert melissa at glencoesoftware.com
Mon Aug 13 18:01:15 BST 2018


Hi Aaron,

Thank you for uploading a sample file.  We can now reproduce the
problem, and are tracking the issue here:

https://trello.com/c/rd6gYzRL/266-nd2-dimension-order-sometimes-incorrect

Regards,
-Melissa

On Fri, Aug 10, 2018 at 8:48 AM, David Gault (Staff)
<d.gault at dundee.ac.uk> wrote:
> Hi,
>
> Thank you for testing and confirming the chunk map option. In that case it is going to be necessary to provide a sample file for us to test. As your file is > 2GB we will follow up with a private mail to provide FTP details to allow you to transfer it.
>
> With Thanks,
> David Gault
>
>> On 9 Aug 2018, at 14:52, Aaron Ponti <aarpon at gmail.com> wrote:
>>
>> Hi,
>>
>> with or without the "chunk map option", the outcome is the same. The series and time indices are swapped.
>>
>> Thanks,
>> a2
>>
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>
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