[ome-users] Bug report: Cannot open jp2 file created by StereoInvestigator

[Sebastien Besson (Staff)]

Hi Kouichi,

thanks, so it appears tika-app.jar is the JAR causing issues here. Most likely, it ships its own
implementation of the JPEG200 package which conflicts with the JAI fork in Bio-Formats.

In the meantime, if you want to use the Bio-Formats JAI functionality in your R2017b installation,
you might have to remove this JAR from the Java class path.

On our end, we will need to identify which toolbox is responsibly for the installation of this JAR on
R2017b.

Best,
Sebastien


> On 30 Oct 2017, at 15:02, Kouichi C. Nakamura <kouichi.c.nakamura at gmail.com> wrote:
>
> There you go.
>
> Kouichi
>
> >> whereisjavaclassloadingfrom('jj2000.j2k.fileformat.reader.FileFormatReader')
> Version: 9.3.0.713579 (R2017b)
> Class:       jj2000.j2k.fileformat.reader.FileFormatReader
> ClassLoader: sun.misc.Launcher$AppClassLoader at c387f44
> URL: jar:file:/C:/Program%20Files/MATLAB/R2017b/java/jarext/tika-app.jar!/jj2000/j2k/fileformat/reader/FileFormatReader.class
>
> --
> Kouichi C. Nakamura, PhD
> Senior Postdoctoral Neuroscientist
> MRC Brain Network Dynamics Unit
> University of Oxford
> Mansfield Road, Oxford OX1 3TH, United Kingdom
> +44-1865-271582 (office)
> http://www.mrcbndu.ox.ac.uk/people/dr-kouichi-c-nakamura
> kouichi.c.nakamura at gmail.com
> kouichi.nakamura at pharm.ox.ac.uk
>
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