[ome-users] Skewed czi images using bioformats

[David Gault (Staff)]

Hi Dominik,

Thanks for reporting this issue, can you confirm which version of Bio-Formats you were using?
Taking a look through previously reported CZI issues and I was wondering if you believe the issue is related to a similar problem seen in the thread below:
https://www.openmicroscopy.org/community/viewtopic.php?f=13&t=8050

If you do have a sample file displaying this which is less than 2GB you can submit it to https://www.openmicroscopy.org/qa2/qa/upload/

With Thanks,
David Gault

> On 7 Jun 2017, at 10:07, Dominik Drabik <dominik.drabik at pwr.edu.pl> wrote:
>
>
> Hello,
> When opening large czi sequences of images, images are displayed incorrectly (they are disordered, skewed). This issue do not appear when images are opened using ZEN Lite software. Is there a way to fix pixel locations?
>
>
> Files in question are large 2,34GB set of images.
> Please see attached ZEN Lite version and Bioformats 5.3.4 version (opened using Matlab, however same issue remains in Fiji) images as well as metadata.
>
>
> Best regards <ImgDistorsions.jpg><Metadata.xls>_______________________________________________
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