[ome-users] Question about XML annotation file.

Qi Gong qigong at gwmail.gwu.edu
Tue Feb 21 16:09:12 GMT 2017


Hello everyone,

We are using Bio-format to extract ROI from WSI image in Matlab. At the
same time, we also want to open manufacturer viewer (imagescope) to open
the WSI image with an annotation of the ROI. We have used matlab to
generate the XML annotation file. But every time we have to manually use
imagescope viewer GUI to load the XML file. We want to know, does Bioformat
provides a function to use command line to apply XML file on WSI image. Is
"xmlindent" a potential function? Thank you.

Regards,
Qi

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