[ome-users] Getting a list of OMERO figures
Stephen Taylor
stephen.taylor at imm.ox.ac.uk
Fri Feb 10 09:41:10 GMT 2017
Hi Will,
Thank you very much. I haven't had a chance to test it yet but will let you know how I get on.
Kind regards and thanks,
Steve
=======================================
Head of Computational Biology Research Group
Weatherall Institute of Molecular Medicine
University of Oxford
> -----Original Message-----
> From: ome-users [mailto:ome-users-bounces at lists.openmicroscopy.org.uk]
> On Behalf Of William Moore (Staff)
> Sent: 07 February 2017 11:51
> To: OME User Support List <ome-users at lists.openmicroscopy.org.uk>
> Subject: Re: [ome-users] Getting a list of OMERO figures
>
> Hi Steve,
>
> You just need to list file annotations with the correct namespace
> “omero.web.figure.json”.
>
> You can do that in the Python Blitz Gateway with
>
> # set context to a cross-group query
> conn.SERVICE_OPTS.setOmeroGroup(-1)
>
> for f in conn.getObjects("FileAnnotation", attributes={"ns":
> "omero.web.figure.json"}):
>
> # E.g. print something useful...
> print f.getId(), f.getFile().getName(), f.getOwner().getFullName()
>
> Hope that helps,
>
> Will.
>
>
> > On 7 Feb 2017, at 10:08, Stephen Taylor <stephen.taylor at imm.ox.ac.uk>
> wrote:
> >
> > Hi,
> >
> > I am trying to get a list of the OMERO.figures in an OMERO database. I can
> do this manually by logging into OMERO and then get a JSON string by going
> to the URL:
> >
> > https://xxxxx/figure/list_web_figures/
> >
> > I'd like to do this regularly (e.g. nightly) so presumably I can automate this
> using wget/curl/urllib2 but I wondered if there is a more official way using the
> OMERO API?
> >
> > Kind regards and thanks,
> >
> > Steve
> > =======================================
> > Head of Computational Biology Research Group Weatherall Institute of
> > Molecular Medicine University of Oxford
> >
> >
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