[ome-users] Example for MapAnnotation in Java bindings

[Mason, David [dnmason]]

Brilliant, that's just what I needed!


I was indeed talking about macro code, but nothing general enough to be useful. I think the idea to just but some basic commands like a gaussian blur or a background subtraction (as in the other training materials) is fine.


Thanks again!

Dave

________________________________
From: ome-users <ome-users-bounces at lists.openmicroscopy.org.uk> on behalf of Jean-Marie Burel (Staff) <j.burel at dundee.ac.uk>
Sent: 12 December 2017 20:12:28
To: OME User Support List
Subject: Re: [ome-users] Example for MapAnnotation in Java bindings

Hi Dave

I have opened a PR with an example on how to create a map annotation and add link it to an image
using the Java Gateway
https://github.com/openmicroscopy/openmicroscopy/pull/5601

Hope it helps

Cheers

Jmarie
From: ome-users <ome-users-bounces at lists.openmicroscopy.org.uk<mailto:ome-users-bounces at lists.openmicroscopy.org.uk>> on behalf of jmarie burel <j.burel at dundee.ac.uk<mailto:j.burel at dundee.ac.uk>>
Reply-To: OME User Support List <ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Date: Tuesday, 12 December 2017 at 18:21
To: OME User Support List <ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Subject: Re: [ome-users] Example for MapAnnotation in Java bindings

Dear Dave

Thanks for your feedback. This is greatly appreciated

We will prepare an example of Map Annotations in Java in the coming days.
Following Balaji’s feedback, we  will also adjust one of the exercises to use Map annotation instead of tag so it can record the parameters.
By IJ1 code, do you mean macro?
Anything that we could convert and include in some of the training material or is it too specific to your need?

Thanks again

Jmarie




From: ome-users <ome-users-bounces at lists.openmicroscopy.org.uk<mailto:ome-users-bounces at lists.openmicroscopy.org.uk>> on behalf of "Mason, David [dnmason]" <D.N.Mason at liverpool.ac.uk<mailto:D.N.Mason at liverpool.ac.uk>>
Reply-To: OME User Support List <ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Date: Tuesday, 12 December 2017 at 15:21
To: "ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>" <ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Subject: [ome-users] Example for MapAnnotation in Java bindings


Firstly, I was at the Cambridge OMERO training last Friday and it was really useful, so a big thanks to Will, Balaji, Petr and all else involved behind the scenes.


I have a whole library of IJ1 code (that i can easily convert to Java) that I want to run client side on our OMERO server and I think MapAnnotations are a great way to record processing / ImageAnalysis parameters.


Would it be possible for someone to provide an example snippet for MapAnnotations (as there is for python here: https://docs.openmicroscopy.org/omero/5.4.1/developers/Python.html#write-data ) but in Java. There is not one present on the equivalent Java bindings page and I'm having a hard time transcoding the python.<https://docs.openmicroscopy.org/omero/5.4.1/developers/Python.html#write-data>


Many Thanks!


Dave

The University of Dundee is a registered Scottish Charity, No: SC015096

The University of Dundee is a registered Scottish Charity, No: SC015096
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