[ome-users] Fwd: FW: EXT: Re: .dv large time series file open bug?

[Jason Swedlow (Staff)]

Hi Dan-

Thank for this.  While we appreciate the diligent support you are providing to your customer, it would help us a lot if Deanna would upload the file herself using OME's resources at https://www.openmicroscopy.org/qa2/qa/upload/.  That gets it into our issue tracking system, and gives us the means to follow-up, test our work, etc.  In short, everything will work better and we'll get all this resolved faster.

Thanks!!

Cheers,

Jason

From: ome-users <ome-users-bounces at lists.openmicroscopy.org.uk<mailto:ome-users-bounces at lists.openmicroscopy.org.uk>> on behalf of Daniel White <dan at chalkie.org.uk<mailto:dan at chalkie.org.uk>>
Reply-To: OME Users <ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Date: Tuesday, 27 September 2016 13:13
To: OME Users <ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Subject: [ome-users] Fwd: FW: EXT: Re: .dv large time series file open bug?

Hi Bio-formats folks

please see below  the box link to a very large .dv file that apparently doesnt open in fiji.

Best

Dan

@@@@@@@@@@@@@@@@@@@22
It's too large to upload there, so I put it up on box.com<http://box.com>. Feel free to share the link with whoever needs it:

https://uitno.box.com/s/sba6jo3t2dbn21a4zxz2quruw1usllal
________________________________________
From: White, Daniel J (GE Healthcare) <daniel.J.white at ge.com<mailto:daniel.J.white at ge.com>>
Sent: Monday, September 26, 2016 6:19 PM
To: Deanna Wolfson
Subject: Fwd: EXT: Re: [ome-users] .dv large time series file open bug?

Hi Deanna,

The bioformats folks would like to see the big file.

Can you please upload it at
https://www.openmicroscopy.org/qa2/qa/upload<https://www.openmicroscopy.org/qa2/qa/upload/>/

Then they can test it.

Cheers

Dan

Best regards,

Daniel J. White Ph.D.
Applications Scientist - High/Super resolution microscopy Life Sciences - Cell Technologies GE Healthcare

T: +49 1522 1861813<tel:%2B49%201522%201861813><tel:+49%201522%201861813> daniel.j.white at ge.com<mailto:daniel.j.white at ge.com><mailto:daniel.j.white at ge.com<mailto:daniel.j.white at ge.com>>
www.gelifesciences.com<http://www.gelifesciences.com><http://www.gelifesciences.com/>



Begin forwarded message:

From: Daniel White <dan at chalkie.org.uk<mailto:dan at chalkie.org.uk><mailto:dan at chalkie.org.uk<mailto:dan at chalkie.org.uk>>>
Date: 26. September 2016 um 18:17:19 MESZ
To: Dan White <daniel.j.white at ge.com<mailto:daniel.j.white at ge.com><mailto:daniel.j.white at ge.com<mailto:daniel.j.white at ge.com>>>
Subject: EXT: Re: [ome-users] .dv large time series file open bug?


Fwd to Deanna

On 26 Sep 2016 17:21, "Mark Carroll" <m.t.b.carroll at dundee.ac.uk<mailto:m.t.b.carroll at dundee.ac.uk><mailto:m.t.b.carroll at dundee.ac.uk<mailto:m.t.b.carroll at dundee.ac.uk>>> wrote:
Dear Dan,

So there is a sample file as described above uploaded to imageJ upload server, but i dont have rights to see that, so i cant test it myself.
Maybe someone can share it with me somehow?

I am afraid that the OME team generally don't have access to ImageJ's servers either. If Deanna could upload instead to https://www.openmicroscopy.org/qa2/qa/upload/ then we are happy to try opening her file with Fiji and seeing what Bio-Formats is doing with it.
If the file is too large then we can privately provide FTP upload credentials.

In the meantime, please do let us know if the GE folks say anything interesting about format issues with so many time points in case there is something that we need to feed back into the DeltaVision reader.

Cheers,

Mark

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