[ome-users] Bug report for version 2012-06 OME-XML in Fiji, seen in grid/collection stitching

[Michael Pinkert]

Hi Mark,

I just uploaded 9 files, from a much smaller sample image set.  I tried using the ImageJ/Fiji stitching algorithm again with this smaller sample size and it ran into the same problem, with the same warning.  It seems not to be reading the metadata correctly, because it was interpreting different Z-slices as different T-time points.  

This problem occurred after a recent Fiji/ImageJ update and applies to older sets of images that I've already stitched; I don't think there's anything wrong with the formatting of the images.

Best,
Michael

-----Original Message-----
From: ome-users [mailto:ome-users-bounces at lists.openmicroscopy.org.uk] On Behalf Of Mark Carroll
Sent: Tuesday, November 8, 2016 9:32 AM
To: ome-users at lists.openmicroscopy.org.uk
Subject: Re: [ome-users] Bug report for version 2012-06 OME-XML in Fiji, seen in grid/collection stitching

On 11/08/2016 03:28 PM, Michael Pinkert wrote:

> I’d be happy to upload the files, but they’re currently sized at 8 gigabytes or larger.  Is that acceptable to upload, or should I try to acquire a smaller sample size?

If you can reproduce the issue with a much smaller acquisition then that would be great. Or, if there's an easy way you can make the larger file available for download. Otherwise, just ask and we can generate and provide you with FTP upload credentials by private e-mail so that you can send us the large file.

-- Mark

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