[ome-users] FEI MORE tf8 files sorted to Orphaned Images

[Niko Ehrenfeuchter]

Hi Dominik,

thanks for investigating. We have noticed this also for "regular" (i.e. 
non-BigTIFF) TIFF files, although not for all of them iirc.

Right now I'm suspecting all of the files causing this problem to be 
created with FEI's "LA" (Live Acquisition) software on our MORE system, 
but I'm not completely sure about this.

Cheers,
Niko

On 26.05.2016 11:42, Dominik Lindner (Staff) wrote:
> Hi Kai,
>
> thanks for reporting this issue and the detailed workflow description. I could replicate the problem perfectly with your workflow. I opened a ticket for now: https://trac.openmicroscopy.org/ome/ticket/13243 I'll have to dig in a bit more, to find out what's causing this behaviour. It seems to be specific for the tf8 files, can't replicate with other formats.
>
> Kind Regards,
> Dominik
>
>
>> On 25 May 2016, at 14:59, Kai Schleicher <kai.schleicher at unibas.ch> wrote:
>>
>> Hi,
>>
>> I have problems when uploading bigtifs (*.tf8) from the FEI MORE as they are sorted into the Orphaned images folder.
>>
>> For example, I have uploaded one of my images (ID 206157) to your OMERO 5.2.3 demo server using the corresponding client to be sorted into the an existing Project called "MORE" and into a new dataset called "ome bigtif tf8".
>>
>> While the dataset is created correctly in the project, the image itself is placed in "Orphaned Images."
>>
>> Thanks for your help and cheers,
>> Kai
>>
>> --
>>
>> Kai Schleicher, PhD | Research Associate in Advanced Light Microscopy | Biozentrum, University of Basel | Klingelbergstrasse 50/70 | CH-4056 Basel |
>> Phone: +41 61 267 22 50 | kai.schleicher at unibas.ch | www.biozentrum.unibas.ch | www.microscopynetwork.unibas.ch
>>
>> _______________________________________________
>> ome-users mailing list
>> ome-users at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>

-- 
Niko Ehrenfeuchter | Image Analysis Specialist | Biozentrum, University 
of Basel | Klingelbergstr. 50/70 | CH-4056 Basel
Phone: +41 (61) 26 72673 | nikolaus.ehrenfeuchter at unibas.ch | 
www.biozentrum.unibas.ch | www.microscopynetwork.unibas.ch