[ome-users] opening czi files.

[Balaji Ramalingam (Staff)]

Hi,

Thank you for submitting your files.
We were able to reproduce the issue on one of the files ŒConv 2 3 colors¹,
using Bio-Formats 5.1.9 on FIJI.

I have filed a ticket on this regard,
https://trac.openmicroscopy.org/ome/ticket/13239

This will get looked into at the earliest.
I have also added you to the CC list and you will get notified when there
is a status change on the ticket.

Hope that helps.

Best,
Balaji
__________________
Mr Balaji Ramalingam
Software Developer

OME Team
College of Life Sciences
University of Dundee






On 18/05/2016 08:58, "Raphael J. Courjaret"
<rac2017 at qatar-med.cornell.edu> wrote:

>Hi and thanks for the reply.
>I uploaded three files in czi format.
>Strangely now none of them open after updating FIJI...
>
>Conv 2 3 colors BandW
>Conv 2 3 colors
>Convalaria 2 channels
>
>They are listed in the software as 36 bits for the RGB ones and 12 bits
>for the B&W...
>When FIJI opened some they were declared as 16bits...?
>
>Regards
>
>Raphael COURJARET
>Research Associate
>Research Department
>Weill Cornell Medicine - Qatar
>Qatar Foundation -Education City
>P.O.Box  24144
>DOHA - STATE OF QATAR
>Tel   +974 4492 8453
>Mob +974 3347 5013
>Fax  +974 4492 8422
>rac2017 at qatar-med.cornell.edu
>__________________
>
>Mr Balaji Ramalingam
>
>Software Developer
>
>OME Team
>
>College of Life Sciences
>
>University of Dundee
>
>From: "Raphael J. Courjaret"
><rac2017 at qatar-med.cornell.edu<mailto:rac2017 at qatar-med.cornell.edu>>
>Reply-To: OME User Support List
><ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicrosco
>py.org.uk>>
>Date: Tuesday, 17 May 2016 06:37
>To:
>"ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicrosco
>py.org.uk>"
><ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicrosco
>py.org.uk>>
>Subject: [ome-users] Czi image using Bio-Format/FIJI
>
>Good morning all.
>We are trying to open with FIJI some files that have been produced with
>Zen Blue and are saved as .czi. Single channel files open well but multi
>fail to open (36 bits, RVB).
>FIJI and the Bio-format plugin are up to date.
>
>Regards
>
>Raphael COURJARET
>Research Associate
>Research Department
>Weill CornellMedicine- Qatar
>Qatar Foundation -Education City
>P.O.Box  24144
>DOHA - STATE OF QATAR
>Tel   +974 4492 8453
>Mob +974 3347 5013
>Fax  +974 4492 8422
>rac2017 at qatar-med.cornell.edu<mailto:rac2017 at qatar-med.cornell.edu>
>
>
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The University of Dundee is a registered Scottish Charity, No: SC015096