[ome-users] FEI MORE tf8 files sorted to Orphaned Images

[Nikolaus Ehrenfeuchter]

Hi Dominik,

Kai and me did some more investigation on this and figured out that the tf8 files will be  placed in the correct location when using the command-line importer instead of insight. Does this give any additional hint?

Cheers
Niko

Am 14.07.2016 2:11 nachm. schrieb "Dominik Lindner (Staff)" <d.lindner at dundee.ac.uk>:
Hi Kai,

sorry, that issue slipped a bit from my attention. Up to now I traced it back to the
OMETiffReader. For these files it reports "High-Content Screening (HCS)", that causes
the Insight importer to ignore the Dataset/Project settings. I'm not sure if that's an
Importer problem, or more a Bioformats issue. I'll have to involve some Bioformats people
into this. Sorry for the late reply.

Cheers,
Dominik


> On 13 Jul 2016, at 13:45, Kai Schleicher <kai.schleicher at unibas.ch> wrote:
>
> Hi Dominik,
>
> I was just wondering whether you'd already have some news regarding this issue.
>
> I have just tested this problem again with OMERO 5.2.4, but it still persists.
>
> As Niko wrote this is indeed the case for both "regular" TIFFs and tf8 files recorded with the LA software on the FEI MORE.
>
> Thanks and cheers,
> Kai


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