[ome-users] FEI MORE tf8 files sorted to Orphaned Images

[Kai Schleicher]

Hi Dominik,

I was just wondering whether you'd already have some news regarding this 
issue.

I have just tested this problem again with OMERO 5.2.4, but it still 
persists.

As Niko wrote this is indeed the case for both "regular" TIFFs and tf8 
files recorded with the LA software on the FEI MORE.

Thanks and cheers,
Kai

On 05/26/2016 11:49 AM, Niko Ehrenfeuchter wrote:
> Hi Dominik,
>
> thanks for investigating. We have noticed this also for "regular" 
> (i.e. non-BigTIFF) TIFF files, although not for all of them iirc.
>
> Right now I'm suspecting all of the files causing this problem to be 
> created with FEI's "LA" (Live Acquisition) software on our MORE 
> system, but I'm not completely sure about this.
>
> Cheers,
> Niko
>
> On 26.05.2016 11:42, Dominik Lindner (Staff) wrote:
>> Hi Kai,
>>
>> thanks for reporting this issue and the detailed workflow 
>> description. I could replicate the problem perfectly with your 
>> workflow. I opened a ticket for now: 
>> https://trac.openmicroscopy.org/ome/ticket/13243 I'll have to dig in 
>> a bit more, to find out what's causing this behaviour. It seems to be 
>> specific for the tf8 files, can't replicate with other formats.
>>
>> Kind Regards,
>> Dominik
>>
>>
>>> On 25 May 2016, at 14:59, Kai Schleicher <kai.schleicher at unibas.ch> 
>>> wrote:
>>>
>>> Hi,
>>>
>>> I have problems when uploading bigtifs (*.tf8) from the FEI MORE as 
>>> they are sorted into the Orphaned images folder.
>>>
>>> For example, I have uploaded one of my images (ID 206157) to your 
>>> OMERO 5.2.3 demo server using the corresponding client to be sorted 
>>> into the an existing Project called "MORE" and into a new dataset 
>>> called "ome bigtif tf8".
>>>
>>> While the dataset is created correctly in the project, the image 
>>> itself is placed in "Orphaned Images."
>>>
>>> Thanks for your help and cheers,
>>> Kai
>>>
>>> -- 
>>>
>>> Kai Schleicher, PhD | Research Associate in Advanced Light 
>>> Microscopy | Biozentrum, University of Basel | Klingelbergstrasse 
>>> 50/70 | CH-4056 Basel |
>>> Phone: +41 61 267 22 50 | kai.schleicher at unibas.ch | 
>>> www.biozentrum.unibas.ch | www.microscopynetwork.unibas.ch
>>>
>>> _______________________________________________
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>>> ome-users at lists.openmicroscopy.org.uk
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>>
>>
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>