[ome-users] Problems with Bio-Formats, Leica LIF file, Metadata

[Melissa Linkert]

Hi Anna,

> I am missing information in the metadata of Leica Lif-files after
> opening with Bio-Formats (version 10-Dec-2015). In particular I am
> looking for the information that in the LAS X Software is listed
> under "Laser Lines". In my case it was  "Supercontinuum Visible
> (650), Shutter: on, Intensity: 0.3999%".

Thank you for reporting this problem.

The problem is noted on our issue tracking system:

https://trac.openmicroscopy.org/ome/ticket/12237

If you would like to be automatically notified of updates to that
ticket, please let us know.

Some of this metadata should still be displayed for the last laser line.
Entries in the original metadata table beginning with
"ATLConfocalSettingDefinition|Aotf|LaserLineSetting" should contain each piece
of metadata associated with the last laser line.  The original metadata
table can be shown in ImageJ by checking the "Display metadata" box in
the "Bio-Formats Import Options" window; in other applications, see
pages linked from:

http://www.openmicroscopy.org/site/support/bio-formats5.1/users/index.html

Regards,
-Melissa

On Thu, Jan 14, 2016 at 06:16:33PM +0100, Anna Klemm wrote:
> Dear OME Users,
> 
> I am missing information in the metadata of Leica Lif-files after
> opening with Bio-Formats (version 10-Dec-2015). In particular I am
> looking for the information that in the LAS X Software is listed
> under "Laser Lines". In my case it was  "Supercontinuum Visible
> (650), Shutter: on, Intensity: 0.3999%".
> 
> Thank you for your help
> Anna
> 
> -- 
> ___________________________________________
> 
> Dr. Anna Klemm
> Ludwig-Maximilians-University
> Biomedical Center Munich
> Core Facility Bioimaging (N.C. 02.011)
> 
> Großhaderner Strasse 9
> 82152 Planegg-Martinsried
> Tel (Office): +49 (0)89 2180 71-518
> Fax: +49 (0)89 2180 71-553
> E-mail: anna.klemm at med.uni-muenchen.de
> ___________________________________________
> 
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