[ome-users] Issue importing ND2 files with newer Bio-Formats

[David Gault (Staff)]

Hi Mike,

Thanks you for bringing this to our attention. I have tested with a number of the sample files which we have but have been unable to reproduce the same behaviour so far.
If possible would you be able to upload, using the link below, a sample file which shows this distortion?

https://www.openmicroscopy.org/qa2/qa/upload/


With Thanks,
David Gault

On 5 Dec 2016, at 14:41, Myerburg, Mike <myerburgm at upmc.edu<mailto:myerburgm at upmc.edu>> wrote:

Hi-

I have been using LOCI / Bio-formats for several years to import ND2 files.  Thank you for all the work you have put into making this excellent tool.  I have been having issues importing ND2 files using the newer versions.

My files import using an older version-
Found library Bio-Formats:
    Version = 2 January 2012
However, the imported are profoundly distorted when using more recent versions (and they import a 3rd channel)-
Found library Bio-Formats:
    Version = 17 October 2016
Please see attached image (old version on left, new on right).

Please advise.

Thanks, Mike

_____________________________________________
Mike Myerburg, M.D.
Division of Pulmonary, Allergy, and Critical Care Medicine
University of Pittsburgh
Office: (412) 624-8907
Pager: (412) 958-4773

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