[ome-users] Helping debugging web access

Aleksandra Tarkowska (Staff) A.Tarkowska at dundee.ac.uk
Thu Apr 28 16:49:56 BST 2016


Thank for supplying more details
all of the looks correct

before, I gave you steps to start gunicorn directly although it was missing one thing
could you try again


$ source venv/bin/activate
$ cd lib/python/

$ ls -al omeroweb
lrwxr-xr-x  1 ola  staff  68 28 Apr 15:45 omeroweb

you have to be in /home/omero/OMERO.server/lib/python

$ gunicorn --bind 127.0.0.1:4080 --workers 5 --threads 1 --timeout 60 --max-requests 0 omeroweb.wsgi:application
[2016-04-28 16:41:27 +0100] [13341] [INFO] Starting gunicorn 19.4.5
[2016-04-28 16:41:27 +0100] [13341] [INFO] Listening at: http://127.0.0.1:4080 (13341)
[2016-04-28 16:41:27 +0100] [13341] [INFO] Using worker: sync
[2016-04-28 16:41:27 +0100] [13344] [INFO] Booting worker with pid: 13344
[2016-04-28 16:41:28 +0100] [13345] [INFO] Booting worker with pid: 13345
[2016-04-28 16:41:28 +0100] [13346] [INFO] Booting worker with pid: 13346
[2016-04-28 16:41:28 +0100] [13347] [INFO] Booting worker with pid: 13347
[2016-04-28 16:41:28 +0100] [13348] [INFO] Booting worker with pid: 13348

you could send logs via http://qa.openmicroscopy.org.uk/qa/upload/


Ola
Software Engineer
Open Microscopy Environment
University of Dundee

On 28 Apr 2016, at 16:38, Shaun Hare <Shaun.Hare at nottingham.ac.uk<mailto:Shaun.Hare at nottingham.ac.uk>> wrote:

Thanks for your support with this

================================================================================
OMERO Diagnostics 5.2.2-ice35-b17
================================================================================

Commands:   java -version                  1.8.0     (/bin/java)
Commands:   python -V                      2.7.5     (/home/omero/venv/bin/python -- 2 others)
Commands:   icegridnode --version          3.5.1     (/bin/icegridnode)
Commands:   icegridadmin --version         3.5.1     (/bin/icegridadmin)
Commands:   psql --version                 9.4.7     (/bin/psql)

Server:     icegridnode                    running
Server:     Blitz-0                        active (pid = 1854, enabled)
Server:     DropBox                        active (pid = 1877, enabled)
Server:     FileServer                     active (pid = 1866, enabled)
Server:     Indexer-0                      active (pid = 1889, enabled)
Server:     MonitorServer                  active (pid = 1904, enabled)
Server:     OMERO.Glacier2                 active (pid = 1911, enabled)
Server:     OMERO.IceStorm                 active (pid = 1880, enabled)
Server:     PixelData-0                    active (pid = 1868, enabled)
Server:     Processor-0                    active (pid = 1919, enabled)
Server:     Tables-0                       active (pid = 1900, enabled)
Server:     TestDropBox                    inactive (enabled)

Log dir:    /home/omero/OMERO.server/var/log exists
Log files:  Blitz-0.log                    6.0 MB        errors=69   warnings=12
Log files:  DropBox.log                    3.0 KB        errors=0    warnings=1
Log files:  FileServer.log                 0.0 KB
Log files:  Indexer-0.log                  48.0 KB       errors=0    warnings=2
Log files:  MonitorServer.log              2.0 KB
Log files:  OMEROweb.lock                  0.0 KB
Log files:  OMEROweb.log                   6.0 KB        errors=0    warnings=22
Log files:  OMEROweb_brokenrequest.lock    0.0 KB
Log files:  OMEROweb_brokenrequest.log     0.0 KB
Log files:  PixelData-0.log                20.0 KB
Log files:  Processor-0.log                239.0 KB      errors=68   warnings=0
Log files:  Tables-0.log                   2.0 KB
Log files:  TestDropBox.log                n/a
Log files:  master.err                     2.0 KB        errors=0    warnings=2
Log files:  master.out                     0.0 KB
Log files:  Total size                     6.84 MB


Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:OMERO_USERDIR=(unset)
Environment:OMERO_TMPDIR=(unset)
Environment:PATH=/home/omero/venv/bin:/sbin:/bin:/usr/sbin:/usr/bin
Environment:PYTHONPATH=(unset)
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)

OMERO SSL port:4064
OMERO TCP port:4063
OMERO data dir:'/data_repository_san'         Exists? True Is writable? True
OMERO temp dir:'/home/omero/omero/tmp'        Exists? True Is writable? True   (Size: 0)

JVM settings: Blitz-${index}                -Xmx620m -XX:MaxPermSize=512m -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Indexer-${index}              -Xmx413m -XX:MaxPermSize=512m -XX:+IgnoreUnrecognizedVMOptions
JVM settings: PixelData-${index}            -Xmx620m -XX:MaxPermSize=512m -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Repository-${index}           -Xmx413m -XX:MaxPermSize=512m -XX:+IgnoreUnrecognizedVMOptions

OMERO.web status... [NOT STARTED]
Django version: 1.8.12


Config below - (minimal) haven’t finished setting anything like LDAP up yet
omero.data.dir=/data_repository_san
omero.db.name=omero_db
omero.db.pass=********
omero.db.user=omero
omero.web.application_server=wsgi-tcp
omero.web.application_server.port=4080


Shall I email the logs to your account rather than share on list ??

Shaun

From: ome-users <ome-users-bounces at lists.openmicroscopy.org.uk<mailto:ome-users-bounces at lists.openmicroscopy.org.uk>> on behalf of "Aleksandra Tarkowska (Staff)" <A.Tarkowska at dundee.ac.uk<mailto:A.Tarkowska at dundee.ac.uk>>
Reply-To: OME User Support List <ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Date: Thursday, 28 April 2016 at 16:34
To: OME User Support List <ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Subject: Re: [ome-users] Helping debugging web access

$ source venv/bin/activate
$ bin/omero web start



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