[ome-users] Server Upgrade to 5.1.3 Problem

[Matthew DiFranco]

Hi,

I just upgraded my server from 5.1.2 to 5.1.3, but it won't start. The 
diagnostics output is attached. Can you help me out?

Cheers,
Matthew

-- 
Matthew D. DiFranco, PhD
Post-doc Research Assistant
Quantitative Imaging and Medical Physics (QIMP)
Center for Medical Physics and Biomedical Engineering
Medical University of Vienna
Tel: +43 1 40400 19880
E-Mail: matthew.difranco at meduniwien.ac.at
Website: http://www.zmpbmt.meduniwien.ac.at/qimp

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================================================================================
OMERO Diagnostics 5.1.3-ice35-b52
================================================================================
        
Commands:   java -version                  1.7.0     (/usr/bin/java)
Commands:   python -V                      2.7.6     (/usr/bin/python)
Commands:   icegridnode --version          3.5.1     (/usr/bin/icegridnode)
Commands:   icegridadmin --version         3.5.1     (/usr/bin/icegridadmin)
Commands:   psql --version                 9.3.9     (/usr/bin/psql)

Server:     icegridnode                    not started

Log dir:    /home/omero/OMERO.server/var/log exists

Log files:  Blitz-0.log                    54.0 KB       errors=26   warnings=0   
Log files:  DropBox.log                    1.0 KB        errors=2    warnings=1   
Log files:  FileServer.log                 0.0 KB       
Log files:  Indexer-0.log                  54.0 KB       errors=35   warnings=0   
Log files:  MonitorServer.log              0.0 KB       
Log files:  OMEROweb.log                   n/a
Log files:  PixelData-0.log                54.0 KB       errors=35   warnings=0   
Log files:  Processor-0.log                15.0 KB       errors=8    warnings=4   
Log files:  Tables-0.log                   16.0 KB       errors=8    warnings=4   
Log files:  TestDropBox.log                n/a
Log files:  master.err                     0.0 KB        errors=0    warnings=2   
Log files:  master.out                     0.0 KB       
Log files:  Total size                     0.20 MB


Environment:OMERO_HOME=(unset)             
Environment:OMERO_NODE=(unset)             
Environment:OMERO_MASTER=(unset)           
Environment:OMERO_USERDIR=(unset)          
Environment:OMERO_TMPDIR=(unset)           
Environment:PATH=/usr/local/bin:/bin:/usr/bin:/home/omero/OMERO.server/bin 
Environment:PYTHONPATH=(unset)             
Environment:ICE_HOME=(unset)               
Environment:LD_LIBRARY_PATH=(unset)        
Environment:DYLD_LIBRARY_PATH=(unset)      

Cannot list deployed applications.
OMERO data dir:'/mnt/zmpbmt_test/OMERO'       Exists? True	Is writable? True
OMERO temp dir:'/home/omero/omero/tmp'        Exists? True	Is writable? True   (Size: 0)

JVM settings: Blitz                         -Xmx621m -XX:MaxPermSize=512m -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Indexer                       -Xmx414m -XX:MaxPermSize=512m -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Pixeldata                     -Xmx621m -XX:MaxPermSize=512m -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Repository                    -Xmx414m -XX:MaxPermSize=512m -XX:+IgnoreUnrecognizedVMOptions

OMERO.web status... [NOT STARTED]