[ome-users] SlideBookReader Error + DEBUG output

[MEYENHOFER Felix]

Hi 

Whenever I call a bio-formats reader the error further down shows up. It continues to run, but I wonder if this is just an info, that we are missing the license? However as long as we don’t use the slidebookreader, I don’t see why it’s throwing an error instead of a warning.

Also I was wondering how to turn of the DEBUG output of Bio-Formats?


17:04:00.645 [SciJava-35e0c0f9-Thread-2] DEBUG loci.formats.FormatHandler - 3i SlideBook SlideBook6Reader library not found. Please see http://www.openmicroscopy.org/site/support/bio-formats/formats/3i-slidebook.html for details.
java.lang.UnsatisfiedLinkError: null
	at loci.formats.in.SlideBook6Reader.<clinit>(SlideBook6Reader.java:90) ~[formats-gpl-5.1.5.jar:5.1.5]
	at java.lang.Class.forName0(Native Method) [na:1.8.0_40]
	at java.lang.Class.forName(Class.java:264) [na:1.8.0_40]
	at loci.formats.ClassList.<init>(ClassList.java:127) [formats-api-5.1.5.jar:5.1.5]
	at loci.formats.ClassList.<init>(ClassList.java:85) [formats-api-5.1.5.jar:5.1.5]
	at loci.formats.ImageReader.getDefaultReaderClasses(ImageReader.java:78) [formats-api-5.1.5.jar:5.1.5]
	at loci.formats.ImageReader.<init>(ImageReader.java:115) [formats-api-5.1.5.jar:5.1.5]
	at loci.formats.ReaderWrapper.<init>(ReaderWrapper.java:62) [formats-api-5.1.5.jar:5.1.5]
	at loci.formats.ChannelSeparator.<init>(ChannelSeparator.java:78) [formats-bsd-5.1.5.jar:5.1.5]
	at NdpiTileColorSeparator.tile2GcStack(NdpiTileColorSeparator.java:219) [classes/:na]
	at NdpiTileColorSeparator.run(NdpiTileColorSeparator.java:123) [classes/:na]
	at org.scijava.command.CommandModule.run(CommandModule.java:201) [scijava-common-2.47.0.jar:2.47.0]
	at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167) [scijava-common-2.47.0.jar:2.47.0]
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126) [scijava-common-2.47.0.jar:2.47.0]
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65) [scijava-common-2.47.0.jar:2.47.0]
	at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:191) [scijava-common-2.47.0.jar:2.47.0]
	at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_40]
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [na:1.8.0_40]
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [na:1.8.0_40]
	at java.lang.Thread.run(Thread.java:745) [na:1.8.0_40]


Best regards, 

-------------------------------------
Felix Meyenhofer
University of Fribourg
Departement of Medicine - Anatomy
1, Rte. Albert Gockel
CH-1700 Fribourg 

Tel:  +41 26 300 85 45
Web:  www.unifr.ch/anatomy
      www.unifr.ch/bioimage
-------------------------------------