[ome-users] ndpi file pixels are not read correctly

MEYENHOFER Felix felix.meyenhofer at unifr.ch
Wed Oct 14 16:39:59 BST 2015


Hi

this is to report that the bio-formats reader seems to mix up the pixels when reading certain series (magnifications) of the Hamamatsu NDPI files. A screen shot of the pixel pattern can be found here:
https://drive.switch.ch/public.php?service=files&t=f0bd77f7c4a96898c339b3cd5b408515

The file that lead to this can be found here
https://drive.switch.ch/public.php?service=files&t=f006627509d481a9af386e1b90efb1eb
To reproduce: 
Plugins > Bio-Formats > Bio-Formats Importer
(Hyperstack, XYCZT, split channels)
select series 2 (the others are read correctly)

Best, 

Felix


More information about the ome-users mailing list