[ome-users] trouble with thumbnails in omero web
Simon Li
spli at dundee.ac.uk
Thu Nov 12 14:06:33 GMT 2015
Hi Tjelvare
What version of Java are you using? We've come across a similar problem before:
https://trac.openmicroscopy.org/ome/ticket/12612
But it's reported as being fixed in the latest Java 8:
https://bugs.launchpad.net/ubuntu/+source/openjdk-8/+bug/1421501
(that bug report is for Ubuntu, but RHEL/CentOS should also have the updated Java)
Could you provide us with the output of:
- omero admin diagnostics
- omero config get --hide-password (just in case it's different from your ansible config)
Simon
On 12 November 2015 at 13:28, Tjelvar Olsson (JIC) <Tjelvar.Olsson at jic.ac.uk<mailto:Tjelvar.Olsson at jic.ac.uk>> wrote:
Hi,
I cannot currently view thumbnails in: OMERO.web 5.1.2-ice35-b45 running on a CentOS 7 VM, installed using an Ansible playbook developed earlier in the year:
https://github.com/JIC-CSB/omero-ansible
I've just realised that I cannot view thumbnails in the web interface. Looking at the OMERO.
I have appended some output from the OMEROweb.log that seemed relevant.
Any idea what is wrong with my installation?
Regards,
Tjelvare
2015-11-12 13:13:00,143 WARNI [ omero.gateway] (proc.24856) debug:4105 InternalException on <class 'omeroweb.webclient.webclient_gateway.OmeroWebSafeCallWrapper'> to <b1d90d71-3f90-4b72
-b3f8-858d3b3ef964omero.api.RenderingEngine> renderCompressed((object #0 (::omero::romio::PlaneDef)
{
slice = 0
x = 0
y = 0
z = 0
t = 0
region = <nil>
stride = 0
}, <ServiceOptsDict: {'omero.session.uuid': 'abe5fa60-6b2b-4ae6-b7b5-da97732ee258', 'omero.group': '-1', 'omero.client.uuid': '9984e28e-6cfd-4929-90ab-7815ff95c82f'}>), {})
Traceback (most recent call last):
File "/home/omero/OMERO.server/lib/python/omero/gateway/__init__.py", line 4123, in __call__
return self.f(*args, **kwargs)
File "/home/omero/OMERO.server/lib/python/omero_api_RenderingEngine_ice.py", line 307, in renderCompressed
return _M_omero.api.RenderingEngine._op_renderCompressed.invoke(self, ((_def, ), _ctx))
InternalException: exception ::omero::InternalException
{
serverStackTrace = ome.conditions.InternalException: Wrapped Exception: (java.lang.NoClassDefFoundError):
Could not initialize class com.sun.imageio.plugins.jpeg.JPEGImageWriter
at com.sun.imageio.plugins.jpeg.JPEGImageWriterSpi.createWriterInstance(JPEGImageWriterSpi.java:96)
at javax.imageio.spi.ImageWriterSpi.createWriterInstance(ImageWriterSpi.java:351)
at javax.imageio.ImageIO$ImageWriterIterator.next(ImageIO.java:843)
at javax.imageio.ImageIO$ImageWriterIterator.next(ImageIO.java:827)
at ome.logic.CompressImpl.compressToStream(CompressImpl.java:34)
at ome.services.RenderingBean.renderCompressed(RenderingBean.java:545)
at sun.reflect.GeneratedMethodAccessor1781.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at com.sun.proxy.$Proxy107.renderCompressed(Unknown Source)
at sun.reflect.GeneratedMethodAccessor1781.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at com.sun.proxy.$Proxy107.renderCompressed(Unknown Source)
at sun.reflect.GeneratedMethodAccessor2657.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
at ome.services.throttling.Callback.run(Callback.java:56)
at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149)
at ome.services.blitz.impl.RenderingEngineI.renderCompressed_async(RenderingEngineI.java:339)
at sun.reflect.GeneratedMethodAccessor2656.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at omero.cmd.CallContext.invoke(CallContext.java:78)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at com.sun.proxy.$Proxy109.renderCompressed_async(Unknown Source)
at omero.api._RenderingEngineTie.renderCompressed_async(_RenderingEngineTie.java:276)
at omero.api._RenderingEngineDisp.___renderCompressed(_RenderingEngineDisp.java:575)
at omero.api._RenderingEngineDisp.__dispatch(_RenderingEngineDisp.java:1667)
at IceInternal.Incoming.invoke(Incoming.java:222)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2482)
at Ice.ConnectionI.dispatch(ConnectionI.java:1258)
at Ice.ConnectionI.message(ConnectionI.java:1213)
at IceInternal.ThreadPool.run(ThreadPool.java:321)
at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:693)
at java.lang.Thread.run(Thread.java:745)
serverExceptionClass = ome.conditions.InternalException
message = Wrapped Exception: (java.lang.NoClassDefFoundError):
Could not initialize class com.sun.imageio.plugins.jpeg.JPEGImageWriter
}
The University of Dundee is a registered Scottish Charity, No: SC015096
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