[ome-users] MetaXpress image has two-line date string

[Sebastien Besson (Staff)]

Hi Mario,

as a follow-up of my previous email, we now have a Pull Request opened to fix the global
DateTime key/value:
https://github.com/openmicroscopy/bioformats/pull/1677
I would expect this bug to be fixed as part of 5.1.0.

Best,
Sebastien

On 19 Mar 2015, at 15:49, Sebastien Besson (Staff) <s.besson at dundee.ac.uk<mailto:s.besson at dundee.ac.uk>> wrote:

Hi Mario,

thanks for the bug report, we will definitely investigate the culprit  and hopefully have this
fixed for 5.1.0.
In the mean time, the timestamps should be available via the series (not global) metadata
and you should be able to access them using:

tmp=bfopen('b0BCDSL-T069_wG06_s6_z0_t1_cCy5_u001.tif');
tmp{2}.get('DateTime')

ans =

14/03/2014 17:48:55:026

tmp{2}.get('LastSavedTime')

14/03/2014 17:48:55:151

Best,
Sebastien

On 19 Mar 2015, at 14:18, Mario Emmenlauer <mario at emmenlauer.de<mailto:mario at emmenlauer.de>> wrote:


Dear Bio-Formats developers,

I have a small issue with MetaXpress meta data. When I read the image
(link below) from Matlab, I get a DateTime that has two lines, which
I think is wrong. Maybe the string is missing a 'trim'?

  tmp = bfopenh5(aFileName);
  tmp{2}.get('Global DateTime')

ans =

java.lang.String[]:
  '2014:03:14 17:48:55'
  ''

Is this something you (or I) could fix? The image I used is here:
  http://data.marssoft.de/b0BCDSL-T069_wG06_s6_z0_t1_cCy5_u001.tif

All the best, and thanks for your great work,

   Mario Emmenlauer






--
Mario Emmenlauer BioDataAnalysis             Mobil: +49-(0)151-68108489
Balanstrasse 43                    mailto: mario.emmenlauer * unibas.ch<http://unibas.ch>
D-81669 München                          http://www.marioemmenlauer.de/

_______________________________________________
ome-users mailing list
ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>
http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users


The University of Dundee is a registered Scottish Charity, No: SC015096
_______________________________________________
ome-users mailing list
ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>
http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users


The University of Dundee is a registered Scottish Charity, No: SC015096
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20150320/ee639b33/attachment.html>