[ome-users] BioFormats cannot open CZI that was stiched and fused inside ZEN

[Balaji Ramalingam (Staff)]

Hi,

Thank you for reporting your issue.

We were able to reproduce the same locally.
I have filed a ticket for the same,
https://trac.openmicroscopy.org/ome/ticket/12789

And have added you to the CC list.

Notifications will be sent to your email id, when there is a status change on the ticket.
In future cases, it would be helpful if you could submit your raw files to our QA server,
https://www.openmicroscopy.org/qa2/qa/upload/

Thank you.

Best,
Balaji

__________________

Mr Balaji Ramalingam

Software Developer

OME Team

College of Life Sciences

University of Dundee

From: Sebastian Rhode <sebrhode at gmail.com<mailto:sebrhode at gmail.com>>
Reply-To: OME User Support List <ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Date: Thursday, 12 March 2015 12:17
To: "ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>" <ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Subject: [ome-users] BioFormats cannot open CZI that was stiched and fused inside ZEN

Hi guys,

https://dl.dropboxusercontent.com/u/623476/Overview_10X_DAPI_stitched_fused.czi

https://dl.dropboxusercontent.com/u/623476/Overview_10X_DAPI_stitched.czi

The CZI (fused) file above was stiched and fused inside ZEN. When one tries to open this vai BioFormats you get really weired results. --> see attached images

Do you have any idea, what the problem here is?

Sebi

[cid:ii_i764exbt0_14c0deaeca5907f0]
​
[cid:ii_i764fcca1_14c0deb39b5d9715]
​

The University of Dundee is a registered Scottish Charity, No: SC015096
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