[ome-users] Issue with Bioformat reading ets/vsi files

Fethallah Benmansour fethallah.benmansour at gmail.com
Wed Jul 22 16:28:43 BST 2015


Dear Support,

>From Matlab, we are using the the bioformat toolbox to read vsi files
(cellSens VSI from Olympus).

The vsi file is pointing to a few frame_t.ets files located in
sub-directories as follows:
--- stack1           : code bar (not interesting for us)
--- stack10000   : low resolution whole  slide image (not interesting for
us)
--- stack10002   : high resolution image of a selected box
--- stack10005   : high res image of an other selected box

Our problem is that even if we specify to the bfGetReader function to read
the file under stack10005/frame_t.ets, it is reading stack10002/frame_t.ets
instead.

Is there a way to force it to read a specific stack from the slide ?
>From the java code, it seems that when an *.ets file is passed then it
point back to the associated vsi file...

Thank you into advance,

Kind regards,

--
Fethallah
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