[ome-users] Can't open ND file of interupted sequance.

[Dotan Kamber]

Dears,

When trying to open multi-position ND file where the experiment did not finish (not all positions were acquired) the file cannot be opened.

The error received -
java.lang.ArithmeticException: / by zero
                at loci.formats.in.MetamorphReader.initFile(MetamorphReader.java:883)
                at loci.formats.FormatReader.setId(FormatReader.java:1317)
                at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:494)
                at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
                at loci.plugins.in.Importer.showDialogs(Importer.java:141)
                at loci.plugins.in.Importer.run(Importer.java:79)
                at loci.plugins.LociImporter.run(LociImporter.java:81)

The ND file can be opened if it is edited in a way that none-aquired positions are removed from the position list.

Example of ND file –
"NDInfoFile", Version 1.0
"Description", File recreated from images.
"StartTime1", 20150527 14:39:03.085
"DoTimelapse", FALSE
"DoStage", TRUE
"NStagePositions", 27
"Stage1", "row:D,column:19,site:1"
"Stage2", "row:D,column:19,site:2"
"Stage3", "row:D,column:19,site:3"
"Stage4", "row:D,column:20,site:1"
"Stage5", "row:D,column:20,site:2"
"Stage6", "row:D,column:20,site:3"
"Stage7", "row:D,column:21,site:1"
"Stage8", "row:D,column:21,site:2"
"Stage9", "row:D,column:21,site:3"
"Stage10", "row:E,column:21,site:1"
"Stage11", "row:E,column:21,site:2"
"Stage12", "row:E,column:21,site:3"
"Stage13", "row:E,column:20,site:1"
"Stage14", "row:E,column:20,site:2"
"Stage15", "row:E,column:20,site:3"
"Stage16", "row:E,column:19,site:1"
"Stage17", "row:E,column:19,site:2"
"Stage18", "row:E,column:19,site:3"
"Stage19", "row:F,column:19,site:1"
"Stage20", "row:F,column:19,site:2"
"Stage21", "row:F,column:19,site:3"
"Stage22", "row:F,column:20,site:1"
"Stage23", "row:F,column:20,site:2"
"Stage24", "row:F,column:20,site:3"
"Stage25", "row:F,column:21,site:1"
"Stage26", "row:F,column:21,site:2"
"Stage27", "row:F,column:21,site:3"
"DoWave", TRUE
"NWavelengths", 2
"WaveName1", "confmCherry"
"WaveName2", "Brightfield"
"DoZSeries", FALSE
"WaveInFileName", TRUE
"EndFile"

Best,

Dotan
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