[ome-users] strange (bad?) meta data with bfopen for MetaXpress
Mario Emmenlauer
mario at emmenlauer.de
Wed Jan 21 19:52:41 GMT 2015
Dear Bio-Formats developers,
attached is an image from MetaXpress, where I try to read all
available meta data. However there are some values that seem not
to make sense, can you please help if there is a bug, or if the
values are indeed correct, or possibly if the issue is in Meta-
Xpress that stores weired values? Examples are:
Channel #0 Laser focus score 8.2890462076516E-310
Channel #0 Camera Bit Depth 8.289046E-317
These (and some others) seem not to make sense(?) Attached is
also the meta data that I can extract with Bio-Formats from the
latest Fiji, I believe version Bio-Formats 5.0.6.
All the best,
Mario
--
Mario Emmenlauer BioDataAnalysis Mobil: +49-(0)151-68108489
Balanstrasse 43 mailto: mario.emmenlauer * unibas.ch
D-81669 München http://www.marioemmenlauer.de/
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Key Value
BitsPerPixel 16
DimensionOrder XYCZT
IsInterleaved false
IsRGB false
LittleEndian true
PixelType uint16
Series 0 Name
SizeC 1
SizeT 1
SizeX 1392
SizeY 1040
SizeZ 1
AbsoluteZ 2096309
AbsoluteZValid 0
AutoScale 1
AutoScaleHiInfo 0/1
AutoScaleLoInfo 0/1
Binning 1 x 1
BitsPerSample 16
CalibrationUnits ume
Camera Shutter Always Open
CameraBin 1x1
CameraChipOffset 2096260
Channel #0 Camera Bit Depth 8.289046E-317
Channel #0 ImageXpress Micro Filter Cube Cy5
Channel #0 ImageXpress Micro Objective 10X S Fluor
Channel #0 ImageXpress Micro Shutter Open
Channel #0 Laser focus score 8.2890462076516E-310
Channel #0 Lumencor Blue Intensity 8.289046E-317
Channel #0 Lumencor Blue Shutter Closed
Channel #0 Lumencor Cyan Intensity 8.289046E-317
Channel #0 Lumencor Cyan Shutter Closed
Channel #0 Lumencor Green/Yellow Intensity 8.289046E-317
Channel #0 Lumencor Green/Yellow Shutter Closed
Channel #0 Lumencor Red Intensity 8.289046E-317
Channel #0 Lumencor Red Shutter Closed
Channel #0 Lumencor Teal Intensity 8.289046E-317
Channel #0 Lumencor Teal Shutter Closed
Channel #0 Lumencor UV Intensity 8.289046E-317
Channel #0 Lumencor UV Shutter Closed
Channel #0 _IllumSetting_ Cy5
Channel #0 _MagNA_ 8.28904606E-316
Channel #0 _MagRI_ 8.289046E-317
Channel #0 _MagSetting_ 10X S Fluor
Clear Count 2
Clear Mode CLEAR PRE SEQUENCE
Compression LZW
DateTime 19/03/2014 12:59:47:667
Digitizer 20 MHz
Exposure 100 ms
FillOrder Pixels with lower column values are stored in the higher order bits of a byte
Frames to Average 1
Gain Gain 1 (1x)
Gamma 2096317
ImageLength 1040
ImageWidth 1392
LastSavedTime 19/03/2014 12:59:47:790
Location /tmp/b0BCDSL-T070_wD07_s4_z0_t1_cCy5_u001.tif
MaxScale 4095
MetaDataPhotometricInterpretation Monochrome
MinScale 194
Name Cy5
NewLUT 8
NewSubfileType 0
NumberOfChannels 1
PhotometricInterpretation BlackIsZero
PlanarConfiguration Chunky
PlaneProperty 2097094
Predictor Horizontal differencing
Region 1392 x 1040, offset at (0, 0)
ResolutionUnit Inch
SamplesPerPixel 1
Shading Off
Software MetaMorph 3.1.0.79
Spatial Calibration on
StagePosition 2096244
StandardLUT monochrome
Subtract Off
Temperature -29.85
ThreshState off
ThreshStateBlue 64
ThreshStateGreen 128
ThreshStateHi 65535
ThreshStateLo 0
ThreshStateRed 255
Trigger Mode Normal (TIMED)
Wavelength 692
XCalibration 645/1000
XResolution 72
YCalibration 645/1000
YResolution 72
Zoom 35
grayFit 4
grayMax -1/1
grayMin -1/1
grayPointCount 0
grayX -1/1
grayY -1/1
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