[ome-users] Error message help using Bio-Formats 5.1.3 in (Fiji is Just)ImageJ 64-bit

Boudoures, Anna a.l.boudoures at wustl.edu
Mon Aug 17 16:18:21 BST 2015


To whom it may concern -

When I attempt to open my .lif files (I cannot attach them, they are too large) taken on a Leica Scanning Confocal Microscope, in the Bio-Formats Importer, I get the following error message:

(Fiji Is Just) ImageJ 2.0.0-rc-34/1.50a; Java 1.6.0_24 [64-bit]; Windows 7 6.1; 58MB of 6079MB (<1%)
java.lang.ArrayIndexOutOfBoundsException: 0
                at loci.formats.FileStitcher.initFile(FileStitcher.java:892)
                at loci.formats.FileStitcher.setId(FileStitcher.java:872)
                at loci.plugins.in.ImportProcess.initializeStack(ImportProcess.java:522)
                at loci.plugins.in.ImportProcess.execute(ImportProcess.java:147)
                at loci.plugins.in.Importer.showDialogs(Importer.java:137)
                at loci.plugins.in.Importer.run(Importer.java:75)
                at loci.plugins.LociImporter.run(LociImporter.java:78)
                at ij.IJ.runUserPlugIn(IJ.java:212)
                at ij.IJ.runPlugIn(IJ.java:176)
                at ij.Executer.runCommand(Executer.java:132)
                at ij.Executer.run(Executer.java:65)
                at java.lang.Thread.run(Thread.java:662)

I used to be able to open all of my .lif files, but starting last week this was no longer possible. What do I need to do to work around this message and open my files again?

Anna
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