[ome-users] PixelData errors

Tjelvar Olsson (JIC) Tjelvar.Olsson at jic.ac.uk
Fri Oct 31 12:26:21 GMT 2014


Hi Josh,

Thank you for the work around. It worked, and once applied it seemed to
also speed up the startup of the server.

If you need a reproducible test case I could send you my ansible script.
I intend to make it more generally available once I have tested it a bit
more.

Cheers,

Tjelvar

On Wed, 2014-10-29 at 14:26 +0100, Josh Moore wrote:
> On Oct 28, 2014, at 1:27 PM, Tjelvar Olsson (JIC) wrote:
> 
> > Dear all,
> 
> Hi Tjelvar,
> 
> 
> > I have been working on creating an ansible script for automating the
> > installation of an OMERO server on Centos 6.5.
> > 
> > The ansible script seems to be working and I can create a clean
> > installation from scratch.
> 
> Interesting! Let us know how that goes.
> 
> 
> > However, when I run the diagnostic tool on a clean install I get a
> > number of warnings and some errors.
> > Log files:  PixelData-0.log                18.0 KB       errors=7
> > 
> > My question is: should I be worried about the PixelData errors (log file
> > attached)?
> > What do they mean and why are they raised?
> > 
> > Example error:
> > 
> > org.springframework.dao.DuplicateKeyException:
> > PreparedStatementCallback; SQL [insert into configuration (name, value)
> > values (?,?)]; ERROR: duplicate key value violates unique constraint
> > "configuration_pkey"; nested exception is
> > org.postgresql.util.PSQLException: ERROR: duplicate key value violates
> > unique constraint "configuration_pkey"
> 
> Yes, this is a problem that's popped up a few times. See
> http://trac.openmicroscopy.org.uk/ome/ticket/10181
> 
> Unfortunately, we haven't worked out a fix yet. Running the
> following should restart the service and the bottom of the log
> should look happier:
> 
>   bin/omero admin ice server stop PixelData-0
> 
> 
> > Kind regards,
> > Tjelvar
> 
> Cheers,
> ~Josh




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